Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00218 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTATATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTAGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCTCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCAATCATCCCTTCATCAAGAAATTTGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTAAGTTTTCCCAGATAA 1008 41.77 MKTKTPLKQLKLSVPVQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFNHPFIKKFEDKDIDVGILVGSLDPPVSFPR 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2223292 2227048 + Lsi11G002180.1 Lsi11g00218 673385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00218 335 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 334 - -
Lsi11g00218 335 CDD PKc_MAPKK_plant_like 67 314 - -
Lsi11g00218 335 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Lsi11g00218 335 SMART serkin_6 69 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00218 335 SUPERFAMILY Protein kinase-like (PK-like) 67 305 IPR011009 -
Lsi11g00218 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Lsi11g00218 335 ProSiteProfiles Protein kinase domain profile. 69 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00218 335 Pfam Protein kinase domain 70 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00218 335 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 334 - -
Lsi11g00218 335 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lsi11g00218 335 Gene3D Transferase(Phosphotransferase) domain 1 150 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00218 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01358 Lsi-Chr3:24488540 Lsi11g00218 Lsi-Chr11:2223292 2.94E-71 dispersed
Lsi07g00631 Lsi-Chr7:6766995 Lsi11g00218 Lsi-Chr11:2223292 2.17E-59 dispersed
Lsi08g00359 Lsi-Chr8:9808183 Lsi11g00218 Lsi-Chr11:2223292 1.75E-174 dispersed
Lsi11g00177 Lsi-Chr11:1848735 Lsi11g00218 Lsi-Chr11:2223292 1.92E-131 dispersed
Lsi11g00218 Lsi-Chr11:2223292 Lsi04g01186 Lsi-Chr4:17627287 4.91E-35 dispersed
Lsi11g00218 Lsi-Chr11:2223292 Lsi06g00302 Lsi-Chr6:3461235 6.08E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00302 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 1.6e-136 482.6
Lsi11g00177 CCT 27 410 MAP Kinase Kinase Gene Family AT4G26070 56.2 1.6e-115 412.9
Lsi11g00218 . 26 332 MAP Kinase Kinase Gene Family AT4G26070 52.9 3.9e-98 355.1
Lsi06g00302 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 2.2e-133 472.2
Lsi11g00177 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 63.3 3.4e-110 395.2
Lsi11g00218 . 10 312 MAP Kinase Kinase Gene Family AT4G29810 59.4 6.2e-104 374.4
Lsi03g01358 . 36 486 MAP Kinase Kinase Gene Family AT5G40440 73.9 5.8e-207 717.2
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 70.8 8.7e-128 453.8
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT3G21220 69.6 4.0e-130 461.5
Lsi02g00252 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.5e-84 309.3
Lsi11g00218 . 1 335 MAP Kinase Kinase Gene Family AT5G56580 79.7 2.4e-159 558.5
Lsi08g00359 . 5 335 MAP Kinase Kinase Gene Family AT5G56580 64.6 1.9e-119 426.0
Lsi06g00302 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 2.5e-119 425.6
Lsi02g00252 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.3 9.9e-109 390.2
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.9e-76 282.3
Lsi02g00252 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 9.8e-82 300.4
Lsi02g00252 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.2e-114 409.8
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G73500 52.5 4.5e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84013 PF00069 Pkinase 3.00E-58 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00218 Lsi_Chr11 FPKM 126.931366 143.062195 57.689613 57.760525 68.905228 75.225899 73.314079 44.675896 42.766888 47.608986