Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00218 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTATATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTAGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCGCCGCCTTCTGCTCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCAATCATCCCTTCATCAAGAAATTTGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTAAGTTTTCCCAGATAA 1008 41.77 MKTKTPLKQLKLSVPVQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFNHPFIKKFEDKDIDVGILVGSLDPPVSFPR 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2223292 2227048 + Lsi11G002180.1 Lsi11g00218 673385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00218 335 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 334 - -
Lsi11g00218 335 CDD PKc_MAPKK_plant_like 67 314 - -
Lsi11g00218 335 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Lsi11g00218 335 SMART serkin_6 69 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00218 335 SUPERFAMILY Protein kinase-like (PK-like) 67 305 IPR011009 -
Lsi11g00218 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Lsi11g00218 335 ProSiteProfiles Protein kinase domain profile. 69 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00218 335 Pfam Protein kinase domain 70 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00218 335 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 334 - -
Lsi11g00218 335 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lsi11g00218 335 Gene3D Transferase(Phosphotransferase) domain 1 150 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01358 Lsi-Chr3:24488540 Lsi11g00218 Lsi-Chr11:2223292 2.94E-71 dispersed
Lsi07g00631 Lsi-Chr7:6766995 Lsi11g00218 Lsi-Chr11:2223292 2.17E-59 dispersed
Lsi08g00359 Lsi-Chr8:9808183 Lsi11g00218 Lsi-Chr11:2223292 1.75E-174 dispersed
Lsi11g00177 Lsi-Chr11:1848735 Lsi11g00218 Lsi-Chr11:2223292 1.92E-131 dispersed
Lsi11g00218 Lsi-Chr11:2223292 Lsi04g01186 Lsi-Chr4:17627287 4.91E-35 dispersed
Lsi11g00218 Lsi-Chr11:2223292 Lsi06g00302 Lsi-Chr6:3461235 6.08E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84013 PF00069 Pkinase 3.00E-58 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00218 K04368 - csv:101218848 637.106