Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00240 ATGGCCGACGCCACCGTGCCGGAAACCGACTCCGGTGCCACCAATTCCTCGTCCTCGTCTTCCTCCTCGACGTCATGTTCGATCTCCTCCCCATCGAAACAAGGCGGTGGCCGAACCTCGAAGCGCGGTAGAGAAAGTAGCAACAATAGTAATCATCCAAGTTACCGCGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAAAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCCGCCATCCTCAATTTCCCTGAACTCGCTGCCTCATTGCCTCGCCCCGCCTCTTCGTCCCCTCGTGACGTTCAATCCGCCGCCGCCCTTGCCGCTTCAATGCAACTTCCTGACGTTGTCTCACCTCCACCACCGCCACCACCACCACCCTCGTCGCCTCCGTTTTCGTCGTCGTCCGAGTTGGACGAGTCGACGCCGGAGGAATTGAGTGAAATTGTGGTGTTGCCGAGTTTGGGAACGGGGTATGAGGAATCGGCCGAGTCGGTGACTGAGTTCGTGTTTGACGAGTGGCAATATAACTATGGGCCATGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAGAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA 756 54.5 MADATVPETDSGATNSSSSSSSSTSCSISSPSKQGGGRTSKRGRESSNNSNHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYNYGPWDQQNQSSKEEEEEAYEYFIDQMAMAERECVIPTALFQPLPFSW 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2429121 2429876 - Lsi11G002400.1 Lsi11g00240 673407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00240 251 MobiDBLite consensus disorder prediction 142 159 - -
Lsi11g00240 251 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Lsi11g00240 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 234 - -
Lsi11g00240 251 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Lsi11g00240 251 MobiDBLite consensus disorder prediction 140 176 - -
Lsi11g00240 251 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Lsi11g00240 251 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Lsi11g00240 251 MobiDBLite consensus disorder prediction 8 55 - -
Lsi11g00240 251 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Lsi11g00240 251 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 14 234 - -
Lsi11g00240 251 Coils Coil 216 236 - -
Lsi11g00240 251 MobiDBLite consensus disorder prediction 1 58 - -
Lsi11g00240 251 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Lsi11g00240 251 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Lsi11g00240 251 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00965 Lsi-Chr1:7834851 Lsi11g00240 Lsi-Chr11:2429121 1.40E-25 dispersed
Lsi08g00071 Lsi-Chr8:1519264 Lsi11g00240 Lsi-Chr11:2429121 2.90E-30 dispersed
Lsi08g00077 Lsi-Chr8:1652979 Lsi11g00240 Lsi-Chr11:2429121 2.25E-35 dispersed
Lsi08g01086 Lsi-Chr8:19470778 Lsi11g00240 Lsi-Chr11:2429121 2.02E-51 dispersed
Lsi09g00596 Lsi-Chr9:6458757 Lsi11g00240 Lsi-Chr11:2429121 3.56E-34 dispersed
Lsi09g01688 Lsi-Chr9:25348235 Lsi11g00240 Lsi-Chr11:2429121 7.50E-41 dispersed
Lsi07g01282 Lsi-Chr7:18716823 Lsi11g00240 Lsi-Chr11:2429121 1.44E-48 transposed
Lsi08g00181 Lsi-Chr8:3908631 Lsi11g00240 Lsi-Chr11:2429121 5.77E-31 transposed
Lsi05g02189 Lsi-Chr5:28515186 Lsi11g00240 Lsi-Chr11:2429121 1.75E-41 transposed
Lsi11g00240 Lsi-Chr11:2429121 Lsi06g00816 Lsi-Chr6:17232586 1.28E-68 wgd
Lsi11g00240 Lsi-Chr11:2429121 Lsi07g00520 Lsi-Chr7:5483691 1.68E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26136 PF00847 AP2 7.30E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00240 K09286 - csv:101212945 363.229