Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00240 | ATGGCCGACGCCACCGTGCCGGAAACCGACTCCGGTGCCACCAATTCCTCGTCCTCGTCTTCCTCCTCGACGTCATGTTCGATCTCCTCCCCATCGAAACAAGGCGGTGGCCGAACCTCGAAGCGCGGTAGAGAAAGTAGCAACAATAGTAATCATCCAAGTTACCGCGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAAAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCCGCCATCCTCAATTTCCCTGAACTCGCTGCCTCATTGCCTCGCCCCGCCTCTTCGTCCCCTCGTGACGTTCAATCCGCCGCCGCCCTTGCCGCTTCAATGCAACTTCCTGACGTTGTCTCACCTCCACCACCGCCACCACCACCACCCTCGTCGCCTCCGTTTTCGTCGTCGTCCGAGTTGGACGAGTCGACGCCGGAGGAATTGAGTGAAATTGTGGTGTTGCCGAGTTTGGGAACGGGGTATGAGGAATCGGCCGAGTCGGTGACTGAGTTCGTGTTTGACGAGTGGCAATATAACTATGGGCCATGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAGAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA | 756 | 54.5 | MADATVPETDSGATNSSSSSSSSTSCSISSPSKQGGGRTSKRGRESSNNSNHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYNYGPWDQQNQSSKEEEEEAYEYFIDQMAMAERECVIPTALFQPLPFSW | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2429121 | 2429876 | - | Lsi11G002400.1 | Lsi11g00240 | 673407 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00240 | 251 | MobiDBLite | consensus disorder prediction | 142 | 159 | - | - | |
Lsi11g00240 | 251 | CDD | AP2 | 53 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00240 | 251 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 14 | 234 | - | - | |
Lsi11g00240 | 251 | SMART | rav1_2 | 54 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00240 | 251 | MobiDBLite | consensus disorder prediction | 140 | 176 | - | - | |
Lsi11g00240 | 251 | SUPERFAMILY | DNA-binding domain | 54 | 112 | IPR016177 | GO:0003677 | |
Lsi11g00240 | 251 | Gene3D | AP2/ERF domain | 54 | 112 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi11g00240 | 251 | MobiDBLite | consensus disorder prediction | 8 | 55 | - | - | |
Lsi11g00240 | 251 | ProSiteProfiles | AP2/ERF domain profile. | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00240 | 251 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 14 | 234 | - | - | |
Lsi11g00240 | 251 | Coils | Coil | 216 | 236 | - | - | |
Lsi11g00240 | 251 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Lsi11g00240 | 251 | PRINTS | Ethylene responsive element binding protein signature | 55 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00240 | 251 | PRINTS | Ethylene responsive element binding protein signature | 77 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00240 | 251 | Pfam | AP2 domain | 53 | 103 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00965 | Lsi-Chr1:7834851 | Lsi11g00240 | Lsi-Chr11:2429121 | 1.40E-25 | dispersed | |
Lsi08g00071 | Lsi-Chr8:1519264 | Lsi11g00240 | Lsi-Chr11:2429121 | 2.90E-30 | dispersed | |
Lsi08g00077 | Lsi-Chr8:1652979 | Lsi11g00240 | Lsi-Chr11:2429121 | 2.25E-35 | dispersed | |
Lsi08g01086 | Lsi-Chr8:19470778 | Lsi11g00240 | Lsi-Chr11:2429121 | 2.02E-51 | dispersed | |
Lsi09g00596 | Lsi-Chr9:6458757 | Lsi11g00240 | Lsi-Chr11:2429121 | 3.56E-34 | dispersed | |
Lsi09g01688 | Lsi-Chr9:25348235 | Lsi11g00240 | Lsi-Chr11:2429121 | 7.50E-41 | dispersed | |
Lsi07g01282 | Lsi-Chr7:18716823 | Lsi11g00240 | Lsi-Chr11:2429121 | 1.44E-48 | transposed | |
Lsi08g00181 | Lsi-Chr8:3908631 | Lsi11g00240 | Lsi-Chr11:2429121 | 5.77E-31 | transposed | |
Lsi05g02189 | Lsi-Chr5:28515186 | Lsi11g00240 | Lsi-Chr11:2429121 | 1.75E-41 | transposed | |
Lsi11g00240 | Lsi-Chr11:2429121 | Lsi06g00816 | Lsi-Chr6:17232586 | 1.28E-68 | wgd | |
Lsi11g00240 | Lsi-Chr11:2429121 | Lsi07g00520 | Lsi-Chr7:5483691 | 1.68E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26136 | PF00847 | AP2 | 7.30E-13 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00240 | K09286 | - | csv:101212945 | 363.229 |