Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00250 | ATGAGTGCTTCTAAGTTCATTAAATGCGTTACTGTTGGAGATGGAGCTGTTGGGAAGACTTGTATGCTCATCTGTTATACCAGCAATAAGTTCCCCACTGATTATATTCCCACAGTGTTTGACAATTTCAGTGCCAATGTGTCTGTGGATGGGAACATTGTCAATTTGGGATTATGGGACACTGCAGGTCAAGAAGATTATAGCAGGCTAAGGCCTTTGAGTTACAGAGGTGCAGATGTGTTTGTTCTAGCTTTCTCATTAATTAGTAGAGCCAGCTATGAAAATATCCTCAAGAAGTGGATGCCCGAACTGCGTAGGTTTGCACCCAACGTTCCAATCATTCTAGTTGGAACGAAGCTTGATCTCCGCGAGGACCGACGATATGCTAATGAACAGATGGGATATGATGTCATTACATCCTCTCAGGGTGAGGAGCTGAGAAAACAGATTGGTGCTTCAGCTTACATTGAGTGCAGTGCTAAGACACAGCAGCTGTATTTGATACTGCCATCAAAGTTGTTCTGCAACCTCCAAGGAGAAGAGAGGTCACGAGGAAGAAAAGGCGCCGAGGATCGGGCTGCTCGTTCACGAGCATCATTTGTGGAGGCTGTGCTGCCTAGAACACGTCGGGCTGCTGCAATCTCCGAGGGGAGGGGAATGAACTCAAGATTGAGATCATATGAACACACACTCCAAAATCGTTTGCAAATGGAACCTTCATCGGCTAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGGTCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTCATCGTCGCCTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATGTCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGGCGGGGTAGAATCTGGGCGGGGGCTTGCGGTCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGTCTAAGATCTGCGAGAAAAGAGCTTTCGTATTCAATTACAGTCGAGTTGAGTTTGATATTGATTTCAGTATTCCTAAAAGAATGAGTTTGATGTTGGCAAGGATACTCATGGAACCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAAGTACCTGCTTCTCGGCCGTCTGCAATTGTTCCAGGAACAGAAAGCTCGGTTCAAGAAGGTAACAGAACTGAAGAGCAAGAACCAATTAGCAAAGAGGAATATTTTAGAGTTTTTGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAGCATATACTTACGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACTTCGTGTATTGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTATGGTTTGGAGATCGACTTATGGTCGTTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATTTTCACTACTCTAGGCAACTTGACTGAAGAATCATGGCCGGGTTGTTCCGAACTTCCTGATTTTGAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCGAACTGTTCTCCTGATGAAATTTCTATTGTTCAAAGACTTCTTTGTTATAACCCGGCTAATCGAGTGACTGCTATGGAATTGCTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCTTTGTCTGAGCTTCATGTTCCTTCGACCAAAACTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACGATGAGTCGGATTCTGATATGGATGAACTCGGCCCCATGAATGTTACCACCAGTGCCACTGGTTACTCCATTCAGTTTGATTGA | 2253 | 45.67 | MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADVFVLAFSLISRASYENILKKWMPELRRFAPNVPIILVGTKLDLREDRRYANEQMGYDVITSSQGEELRKQIGASAYIECSAKTQQLYLILPSKLFCNLQGEERSRGRKGAEDRAARSRASFVEAVLPRTRRAAAISEGRGMNSRLRSYEHTLQNRLQMEPSSAKSWSIHTRPDIIQKYEILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNVVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSGGVESGRGLAVGELKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQSKICEKRAFVFNYSRVEFDIDFSIPKRMSLMLARILMEPEYVESNEISQPCEMNSSDQVPASRPSAIVPGTESSVQEGNRTEEQEPISKEEYFRVFDELKAKNSANEFDKEAYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCIGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEESWPGCSELPDFEIISFNTIEKPIGLEACLPNCSPDEISIVQRLLCYNPANRVTAMELLQDKYFTEEPLPVPLSELHVPSTKTGQDEDSPAGWYDYDESDSDMDELGPMNVTTSATGYSIQFD | 750 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2550722 | 2560780 | + | Lsi11G002500.1 | Lsi11g00250 | 673417 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00250 | 750 | MobiDBLite | consensus disorder prediction | 733 | 750 | - | - | |
Lsi11g00250 | 750 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 164 | IPR027417 | - | |
Lsi11g00250 | 750 | Pfam | Ras family | 8 | 164 | IPR001806 | GO:0003924|GO:0005525 | |
Lsi11g00250 | 750 | SMART | rab_sub_5 | 7 | 176 | - | - | |
Lsi11g00250 | 750 | SMART | ras_sub_4 | 4 | 184 | - | - | |
Lsi11g00250 | 750 | MobiDBLite | consensus disorder prediction | 701 | 750 | - | - | |
Lsi11g00250 | 750 | PANTHER | RHO FAMILY GTPASE | 1 | 205 | IPR003578 | GO:0005525|GO:0007264 | |
Lsi11g00250 | 750 | Gene3D | Phosphorylase Kinase; domain 1 | 249 | 347 | - | - | |
Lsi11g00250 | 750 | ProSiteProfiles | small GTPase Rho family profile. | 1 | 194 | - | - | |
Lsi11g00250 | 750 | Gene3D | Transferase(Phosphotransferase) domain 1 | 350 | 460 | - | - | |
Lsi11g00250 | 750 | Pfam | Protein kinase domain | 257 | 458 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00250 | 750 | Pfam | Protein kinase domain | 560 | 691 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00250 | 750 | SUPERFAMILY | Protein kinase-like (PK-like) | 243 | 708 | IPR011009 | - | |
Lsi11g00250 | 750 | MobiDBLite | consensus disorder prediction | 452 | 491 | - | - | |
Lsi11g00250 | 750 | Gene3D | Transferase(Phosphotransferase) domain 1 | 542 | 702 | - | - | |
Lsi11g00250 | 750 | PRINTS | Transforming protein P21 ras signature | 47 | 69 | - | - | |
Lsi11g00250 | 750 | PRINTS | Transforming protein P21 ras signature | 7 | 28 | - | - | |
Lsi11g00250 | 750 | PRINTS | Transforming protein P21 ras signature | 109 | 122 | - | - | |
Lsi11g00250 | 750 | PRINTS | Transforming protein P21 ras signature | 30 | 46 | - | - | |
Lsi11g00250 | 750 | ProSiteProfiles | small GTPase Rab1 family profile. | 2 | 248 | - | - | |
Lsi11g00250 | 750 | ProSitePatterns | Protein kinases ATP-binding region signature. | 263 | 286 | IPR017441 | GO:0005524 | |
Lsi11g00250 | 750 | TIGRFAM | small_GTP: small GTP-binding protein domain | 6 | 162 | IPR005225 | GO:0005525 | |
Lsi11g00250 | 750 | MobiDBLite | consensus disorder prediction | 452 | 482 | - | - | |
Lsi11g00250 | 750 | SMART | ran_sub_2 | 12 | 220 | - | - | |
Lsi11g00250 | 750 | PANTHER | RAC-LIKE GTP-BINDING PROTEIN ARAC7 | 1 | 205 | - | - | |
Lsi11g00250 | 750 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 380 | 392 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00250 | 750 | SMART | serkin_6 | 257 | 691 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00250 | 750 | ProSiteProfiles | small GTPase Ras family profile. | 2 | 260 | IPR001806 | GO:0003924|GO:0005525 | |
Lsi11g00250 | 750 | CDD | Rop_like | 6 | 164 | - | - | |
Lsi11g00250 | 750 | ProSiteProfiles | Protein kinase domain profile. | 257 | 691 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00250 | 750 | Gene3D | - | 1 | 170 | IPR027417 | - | |
Lsi11g00250 | 750 | SMART | rho_sub_3 | 9 | 170 | IPR001806 | GO:0003924|GO:0005525 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi06g00853 | Lsi11g00250 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g00494 | Lsi-Chr10:7102355 | Lsi11g00250 | Lsi-Chr11:2550722 | 5.96E-87 | dispersed | |
Lsi11g00250 | Lsi-Chr11:2550722 | Lsi06g01303 | Lsi-Chr6:23571443 | 9.90E-18 | dispersed | |
Lsi06g01534 | Lsi-Chr6:25717515 | Lsi11g00250 | Lsi-Chr11:2550722 | 4.37E-77 | transposed | |
Lsi08g01305 | Lsi-Chr8:21409246 | Lsi11g00250 | Lsi-Chr11:2550722 | 1.00E-89 | transposed | |
Lsi11g00536 | Lsi-Chr11:5625135 | Lsi11g00250 | Lsi-Chr11:2550722 | 1.21E-09 | transposed | |
Lsi11g00250 | Lsi-Chr11:2550722 | Lsi06g00853 | Lsi-Chr6:17968953 | 5.82E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84015 | PF00069 | Pkinase | 1.20E-31 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00250 | - | - | csv:101209606 | 880.937 |