Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00250 ATGAGTGCTTCTAAGTTCATTAAATGCGTTACTGTTGGAGATGGAGCTGTTGGGAAGACTTGTATGCTCATCTGTTATACCAGCAATAAGTTCCCCACTGATTATATTCCCACAGTGTTTGACAATTTCAGTGCCAATGTGTCTGTGGATGGGAACATTGTCAATTTGGGATTATGGGACACTGCAGGTCAAGAAGATTATAGCAGGCTAAGGCCTTTGAGTTACAGAGGTGCAGATGTGTTTGTTCTAGCTTTCTCATTAATTAGTAGAGCCAGCTATGAAAATATCCTCAAGAAGTGGATGCCCGAACTGCGTAGGTTTGCACCCAACGTTCCAATCATTCTAGTTGGAACGAAGCTTGATCTCCGCGAGGACCGACGATATGCTAATGAACAGATGGGATATGATGTCATTACATCCTCTCAGGGTGAGGAGCTGAGAAAACAGATTGGTGCTTCAGCTTACATTGAGTGCAGTGCTAAGACACAGCAGCTGTATTTGATACTGCCATCAAAGTTGTTCTGCAACCTCCAAGGAGAAGAGAGGTCACGAGGAAGAAAAGGCGCCGAGGATCGGGCTGCTCGTTCACGAGCATCATTTGTGGAGGCTGTGCTGCCTAGAACACGTCGGGCTGCTGCAATCTCCGAGGGGAGGGGAATGAACTCAAGATTGAGATCATATGAACACACACTCCAAAATCGTTTGCAAATGGAACCTTCATCGGCTAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGGTCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTCATCGTCGCCTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATGTCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGGCGGGGTAGAATCTGGGCGGGGGCTTGCGGTCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGTCTAAGATCTGCGAGAAAAGAGCTTTCGTATTCAATTACAGTCGAGTTGAGTTTGATATTGATTTCAGTATTCCTAAAAGAATGAGTTTGATGTTGGCAAGGATACTCATGGAACCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAAGTACCTGCTTCTCGGCCGTCTGCAATTGTTCCAGGAACAGAAAGCTCGGTTCAAGAAGGTAACAGAACTGAAGAGCAAGAACCAATTAGCAAAGAGGAATATTTTAGAGTTTTTGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAGCATATACTTACGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACTTCGTGTATTGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTATGGTTTGGAGATCGACTTATGGTCGTTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATTTTCACTACTCTAGGCAACTTGACTGAAGAATCATGGCCGGGTTGTTCCGAACTTCCTGATTTTGAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCGAACTGTTCTCCTGATGAAATTTCTATTGTTCAAAGACTTCTTTGTTATAACCCGGCTAATCGAGTGACTGCTATGGAATTGCTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCTTTGTCTGAGCTTCATGTTCCTTCGACCAAAACTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACGATGAGTCGGATTCTGATATGGATGAACTCGGCCCCATGAATGTTACCACCAGTGCCACTGGTTACTCCATTCAGTTTGATTGA 2253 45.67 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADVFVLAFSLISRASYENILKKWMPELRRFAPNVPIILVGTKLDLREDRRYANEQMGYDVITSSQGEELRKQIGASAYIECSAKTQQLYLILPSKLFCNLQGEERSRGRKGAEDRAARSRASFVEAVLPRTRRAAAISEGRGMNSRLRSYEHTLQNRLQMEPSSAKSWSIHTRPDIIQKYEILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNVVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSGGVESGRGLAVGELKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQSKICEKRAFVFNYSRVEFDIDFSIPKRMSLMLARILMEPEYVESNEISQPCEMNSSDQVPASRPSAIVPGTESSVQEGNRTEEQEPISKEEYFRVFDELKAKNSANEFDKEAYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCIGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEESWPGCSELPDFEIISFNTIEKPIGLEACLPNCSPDEISIVQRLLCYNPANRVTAMELLQDKYFTEEPLPVPLSELHVPSTKTGQDEDSPAGWYDYDESDSDMDELGPMNVTTSATGYSIQFD 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2550722 2560780 + Lsi11G002500.1 Lsi11g00250 673417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00250 750 MobiDBLite consensus disorder prediction 733 750 - -
Lsi11g00250 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 164 IPR027417 -
Lsi11g00250 750 Pfam Ras family 8 164 IPR001806 GO:0003924|GO:0005525
Lsi11g00250 750 SMART rab_sub_5 7 176 - -
Lsi11g00250 750 SMART ras_sub_4 4 184 - -
Lsi11g00250 750 MobiDBLite consensus disorder prediction 701 750 - -
Lsi11g00250 750 PANTHER RHO FAMILY GTPASE 1 205 IPR003578 GO:0005525|GO:0007264
Lsi11g00250 750 Gene3D Phosphorylase Kinase; domain 1 249 347 - -
Lsi11g00250 750 ProSiteProfiles small GTPase Rho family profile. 1 194 - -
Lsi11g00250 750 Gene3D Transferase(Phosphotransferase) domain 1 350 460 - -
Lsi11g00250 750 Pfam Protein kinase domain 257 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00250 750 Pfam Protein kinase domain 560 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00250 750 SUPERFAMILY Protein kinase-like (PK-like) 243 708 IPR011009 -
Lsi11g00250 750 MobiDBLite consensus disorder prediction 452 491 - -
Lsi11g00250 750 Gene3D Transferase(Phosphotransferase) domain 1 542 702 - -
Lsi11g00250 750 PRINTS Transforming protein P21 ras signature 47 69 - -
Lsi11g00250 750 PRINTS Transforming protein P21 ras signature 7 28 - -
Lsi11g00250 750 PRINTS Transforming protein P21 ras signature 109 122 - -
Lsi11g00250 750 PRINTS Transforming protein P21 ras signature 30 46 - -
Lsi11g00250 750 ProSiteProfiles small GTPase Rab1 family profile. 2 248 - -
Lsi11g00250 750 ProSitePatterns Protein kinases ATP-binding region signature. 263 286 IPR017441 GO:0005524
Lsi11g00250 750 TIGRFAM small_GTP: small GTP-binding protein domain 6 162 IPR005225 GO:0005525
Lsi11g00250 750 MobiDBLite consensus disorder prediction 452 482 - -
Lsi11g00250 750 SMART ran_sub_2 12 220 - -
Lsi11g00250 750 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC7 1 205 - -
Lsi11g00250 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Lsi11g00250 750 SMART serkin_6 257 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00250 750 ProSiteProfiles small GTPase Ras family profile. 2 260 IPR001806 GO:0003924|GO:0005525
Lsi11g00250 750 CDD Rop_like 6 164 - -
Lsi11g00250 750 ProSiteProfiles Protein kinase domain profile. 257 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00250 750 Gene3D - 1 170 IPR027417 -
Lsi11g00250 750 SMART rho_sub_3 9 170 IPR001806 GO:0003924|GO:0005525
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00853 Lsi11g00250 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00494 Lsi-Chr10:7102355 Lsi11g00250 Lsi-Chr11:2550722 5.96E-87 dispersed
Lsi11g00250 Lsi-Chr11:2550722 Lsi06g01303 Lsi-Chr6:23571443 9.90E-18 dispersed
Lsi06g01534 Lsi-Chr6:25717515 Lsi11g00250 Lsi-Chr11:2550722 4.37E-77 transposed
Lsi08g01305 Lsi-Chr8:21409246 Lsi11g00250 Lsi-Chr11:2550722 1.00E-89 transposed
Lsi11g00536 Lsi-Chr11:5625135 Lsi11g00250 Lsi-Chr11:2550722 1.21E-09 transposed
Lsi11g00250 Lsi-Chr11:2550722 Lsi06g00853 Lsi-Chr6:17968953 5.82E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84015 PF00069 Pkinase 1.20E-31 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00250 - - csv:101209606 880.937