Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00253 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGGGCCTCGCATCCTCAATCTCATTCAAACTCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCAAAACCACAGACGCAGATGGTGGCGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCCGTTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCTCATGGGATGCGGGACAGCAGGGAGGAGGCAGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCCTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACATATCCACTCATAGATCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTAGGAAGCCCGTCAGTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACAATTCAAGACCAAACAATTGCTACAGAAAAGCAATCTGATGGCCATACAGAAACTTCTGTTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGGCTGATAAAACCACCCCCGATGACTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCACCCATGTCTCCTGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTGCTGCTTCCCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCGCGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTTATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATTCTAGAACTGAAACTCAGAGTAATTTGGGCCAACTCAGCAATAAAGTTACGAAATCTTCGATTACACCGTCAGTGAAGACATCGCAGACAGTAACTCCGGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1782 45.57 MGEEDSVGASQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSNSHSQSQAPLVAQNLPQAQPKPQTQMVAASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRSVPFQQANHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTIATEKQSDGHTETSVASSTQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPRGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGTTNSRTETQSNLGQLSNKVTKSSITPSVKTSQTVTPAVMTLSNDQRQKVLPLS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2562915 2567997 + Lsi11G002530.1 Lsi11g00253 673420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00253 593 MobiDBLite consensus disorder prediction 530 573 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 1 69 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 405 421 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 383 452 - -
Lsi11g00253 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
Lsi11g00253 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 95 121 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 422 436 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 469 488 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 9 32 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 473 487 - -
Lsi11g00253 593 SMART CXC_2 206 247 IPR033467 -
Lsi11g00253 593 SMART CXC_2 121 161 IPR033467 -
Lsi11g00253 593 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 26 577 - -
Lsi11g00253 593 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 383 404 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 44 69 - -
Lsi11g00253 593 PANTHER TESMIN/TSO1-RELATED 26 577 IPR028307 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00253 - - - csv:101211978 1102.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi06g00857 Lsi11g00253 CCT
Lsi06g00857 Lsi11g00253 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01627 Lsi-Chr5:23924031 Lsi11g00253 Lsi-Chr11:2562915 4.82E-31 dispersed
Lsi08g01178 Lsi-Chr8:20397358 Lsi11g00253 Lsi-Chr11:2562915 1.31E-08 dispersed
Lsi09g01088 Lsi-Chr9:17274222 Lsi11g00253 Lsi-Chr11:2562915 8.02E-09 dispersed
Lsi09g01305 Lsi-Chr9:20917935 Lsi11g00253 Lsi-Chr11:2562915 8.00E-28 dispersed
Lsi11g00253 Lsi-Chr11:2562915 Lsi06g00857 Lsi-Chr6:18021992 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00253 CCT,ECH 94 523 CPP Transcription Factor Family AT2G20110 61.4 7.0e-142 501.1
Lsi06g00857 CCT,ECH 34 555 CPP Transcription Factor Family AT2G20110 50.7 2.4e-126 449.5
Lsi11g00253 CCT,ECH 29 530 CPP Transcription Factor Family AT4G29000 56.9 2.7e-150 529.3
Lsi06g00857 CCT,ECH 28 555 CPP Transcription Factor Family AT4G29000 53.0 1.2e-142 503.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26137 PF03638 TCR 3.10E-12 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00253 Lsi_Chr11 FPKM 0.536723 0.82075 0.679881 1.484379 0.682542 0.414323 0.475785 2.481603 2.647745 2.315776