Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00253 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGGGCCTCGCATCCTCAATCTCATTCAAACTCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCAAAACCACAGACGCAGATGGTGGCGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCCGTTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCTCATGGGATGCGGGACAGCAGGGAGGAGGCAGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCCTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACATATCCACTCATAGATCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTAGGAAGCCCGTCAGTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACAATTCAAGACCAAACAATTGCTACAGAAAAGCAATCTGATGGCCATACAGAAACTTCTGTTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGGCTGATAAAACCACCCCCGATGACTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCACCCATGTCTCCTGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTGCTGCTTCCCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCGCGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTTATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATTCTAGAACTGAAACTCAGAGTAATTTGGGCCAACTCAGCAATAAAGTTACGAAATCTTCGATTACACCGTCAGTGAAGACATCGCAGACAGTAACTCCGGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1782 45.57 MGEEDSVGASQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSNSHSQSQAPLVAQNLPQAQPKPQTQMVAASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRSVPFQQANHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTIATEKQSDGHTETSVASSTQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPRGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGTTNSRTETQSNLGQLSNKVTKSSITPSVKTSQTVTPAVMTLSNDQRQKVLPLS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2562915 2567997 + Lsi11G002530.1 Lsi11g00253 673420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00253 593 MobiDBLite consensus disorder prediction 530 573 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 1 69 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 405 421 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 383 452 - -
Lsi11g00253 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
Lsi11g00253 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 95 121 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 422 436 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 469 488 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 9 32 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 473 487 - -
Lsi11g00253 593 SMART CXC_2 206 247 IPR033467 -
Lsi11g00253 593 SMART CXC_2 121 161 IPR033467 -
Lsi11g00253 593 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 26 577 - -
Lsi11g00253 593 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 383 404 - -
Lsi11g00253 593 MobiDBLite consensus disorder prediction 44 69 - -
Lsi11g00253 593 PANTHER TESMIN/TSO1-RELATED 26 577 IPR028307 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00857 Lsi11g00253 CCT
Lsi06g00857 Lsi11g00253 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01627 Lsi-Chr5:23924031 Lsi11g00253 Lsi-Chr11:2562915 4.82E-31 dispersed
Lsi08g01178 Lsi-Chr8:20397358 Lsi11g00253 Lsi-Chr11:2562915 1.31E-08 dispersed
Lsi09g01088 Lsi-Chr9:17274222 Lsi11g00253 Lsi-Chr11:2562915 8.02E-09 dispersed
Lsi09g01305 Lsi-Chr9:20917935 Lsi11g00253 Lsi-Chr11:2562915 8.00E-28 dispersed
Lsi11g00253 Lsi-Chr11:2562915 Lsi06g00857 Lsi-Chr6:18021992 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26137 PF03638 TCR 3.10E-12 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00253 - - csv:101211978 1102.04