Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00260 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCTCCGCCGCCACCAACCCCTAGTGCTGCCCCACCATCGACTCCAACACAACCGCCACCGTCTACTTCACCACCACCAACAACCACTCCGTCGCCGCCTCCGCCTTCCGCTGCAACGCCGCCCGCTTCTCAGCCTCCGCCGACTTCCGCACCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAGCCCACCCCGCCCACTGCATCTCCCTCACCGCCGGCTTCCACTCCTCCGCCATCCAGGCCTTCGAGTTCTCCACCTCCTCCGTCTTCTACTAGCCCTCCGGCTCCTCCAACTGGACGTAGTCCGCCGCCTCCAACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGCCGTCATCGTCCTCCTCCTCGTCTAATATTTCAACTGGACTAGTCGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGGGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGCTCCTCTACCGCCCGATCCTTTAATTGGGATGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACCGGCGTTCGTCCTCCACCTCAACCACTTTATATGAGTAGCAGTGGAGGTTCGGGCTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCCTTCGGTTTCTCAAAGAGTACATTTACTTATGAGGAGTTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTTCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGCGAACGAGAATTTCAGGCTGAAGTTGATATCATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTCGTTTATGAGTTTGTTGCAAACAACACTTTGGAGTTCCATTTACATGGTAAAGGGCGGCCGACCATGGATTGGCAGACAAGACTTAAAATTGCTTTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAACATATTGTTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCCAAGTTTACTTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCCGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGTCCAGTCGATATGAGTAATACTTCCATGGAAGATAGTCTCGTGGACTGGGCTAGGCCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTTGATGCTTTGGTCGATCCAAGGATGCAAAACAACTACAACCACAACGAAATGGCTCGTATGGTTGCCTGCGCTGCTGCTTGTGTTCGTCATTCTGCCAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACACATCACTATCGGATCTCAACGAAGGAGTCAAACCCGGGCAGAGTACAGTGTACAGTTCTTATGGAAGCTCAGATTACGACACCCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGCACAGAATATGGAGCAAGCAGCGAATACAGCGGACCGACAAGCGAGTACGGGCTGTATCCTTCGGGGTCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAGGAGAGTGGAGGCTTCAGTGGACGCTCTTGA | 2016 | 52.03 | MSTPTPAPTSPPATNTTSPPPPTPSAAPPSTPTQPPPSTSPPPTTTPSPPPPSAATPPASQPPPTSAPPPATPSLPPPSTPQPTPPTASPSPPASTPPPSRPSSSPPPPSSTSPPAPPTGRSPPPPTSRTPSTPSRSPPPPSTPSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNAPLPPDPLIGMVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVANNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTVYSSYGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS | 671 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2621815 | 2625529 | - | Lsi11G002600.1 | Lsi11g00260 | 673427 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 220 | 250 | - | - | |
Lsi11g00260 | 671 | Gene3D | Transferase(Phosphotransferase) domain 1 | 377 | 587 | - | - | |
Lsi11g00260 | 671 | PRINTS | Proline rich extensin signature | 1 | 22 | - | - | |
Lsi11g00260 | 671 | PRINTS | Proline rich extensin signature | 39 | 56 | - | - | |
Lsi11g00260 | 671 | PRINTS | Proline rich extensin signature | 22 | 38 | - | - | |
Lsi11g00260 | 671 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 421 | 433 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00260 | 671 | Gene3D | Phosphorylase Kinase; domain 1 | 280 | 376 | - | - | |
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 1 | 145 | - | - | |
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 580 | 602 | - | - | |
Lsi11g00260 | 671 | Pfam | Protein tyrosine and serine/threonine kinase | 306 | 574 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00260 | 671 | SUPERFAMILY | Protein kinase-like (PK-like) | 276 | 574 | IPR011009 | - | |
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 584 | 602 | - | - | |
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 624 | 671 | - | - | |
Lsi11g00260 | 671 | SMART | serkin_6 | 301 | 537 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00260 | 671 | ProSitePatterns | Protein kinases ATP-binding region signature. | 307 | 329 | IPR017441 | GO:0005524 | |
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 625 | 653 | - | - | |
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 185 | 276 | - | - | |
Lsi11g00260 | 671 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 58 | 657 | - | - | |
Lsi11g00260 | 671 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 58 | 657 | - | - | |
Lsi11g00260 | 671 | ProSiteProfiles | Protein kinase domain profile. | 301 | 580 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00260 | 671 | MobiDBLite | consensus disorder prediction | 1 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00265 | Lsi-Chr6:2982630 | Lsi11g00260 | Lsi-Chr11:2621815 | 5.80E-90 | dispersed | |
Lsi07g00440 | Lsi-Chr7:4686133 | Lsi11g00260 | Lsi-Chr11:2621815 | 3.87E-93 | dispersed | |
Lsi07g00562 | Lsi-Chr7:5966015 | Lsi11g00260 | Lsi-Chr11:2621815 | 7.21E-95 | dispersed | |
Lsi11g00260 | Lsi-Chr11:2621815 | Lsi04g00311 | Lsi-Chr4:3137175 | 2.72E-133 | dispersed | |
Lsi01g01078 | Lsi-Chr1:8950868 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.84E-75 | transposed | |
Lsi03g00221 | Lsi-Chr3:2790686 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.96E-164 | transposed | |
Lsi03g01186 | Lsi-Chr3:22280509 | Lsi11g00260 | Lsi-Chr11:2621815 | 6.84E-57 | transposed | |
Lsi04g00550 | Lsi-Chr4:5048319 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.05E-162 | transposed | |
Lsi05g00215 | Lsi-Chr5:2930967 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.15E-69 | transposed | |
Lsi06g01108 | Lsi-Chr6:21334888 | Lsi11g00260 | Lsi-Chr11:2621815 | 7.26E-85 | transposed | |
Lsi06g01186 | Lsi-Chr6:22147902 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.47E-77 | transposed | |
Lsi07g00526 | Lsi-Chr7:5564512 | Lsi11g00260 | Lsi-Chr11:2621815 | 5.52E-64 | transposed | |
Lsi08g00467 | Lsi-Chr8:12398614 | Lsi11g00260 | Lsi-Chr11:2621815 | 6.98E-77 | transposed | |
Lsi10g00357 | Lsi-Chr10:5574081 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.19E-115 | transposed | |
Lsi10g00758 | Lsi-Chr10:10394485 | Lsi11g00260 | Lsi-Chr11:2621815 | 8.31E-76 | transposed | |
Lsi10g00903 | Lsi-Chr10:13489550 | Lsi11g00260 | Lsi-Chr11:2621815 | 4.26E-59 | transposed | |
Lsi11g00501 | Lsi-Chr11:5305734 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.05E-74 | transposed | |
Lsi11g01430 | Lsi-Chr11:22849358 | Lsi11g00260 | Lsi-Chr11:2621815 | 1.24E-74 | transposed | |
Lsi11g00260 | Lsi-Chr11:2621815 | Lsi06g00871 | Lsi-Chr6:18218127 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84016 | PF07714 | PK_Tyr_Ser-Thr | 7.90E-47 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00260 | - | - | bhj:120079307 | 951.429 |