Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00260 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCTCCGCCGCCACCAACCCCTAGTGCTGCCCCACCATCGACTCCAACACAACCGCCACCGTCTACTTCACCACCACCAACAACCACTCCGTCGCCGCCTCCGCCTTCCGCTGCAACGCCGCCCGCTTCTCAGCCTCCGCCGACTTCCGCACCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAGCCCACCCCGCCCACTGCATCTCCCTCACCGCCGGCTTCCACTCCTCCGCCATCCAGGCCTTCGAGTTCTCCACCTCCTCCGTCTTCTACTAGCCCTCCGGCTCCTCCAACTGGACGTAGTCCGCCGCCTCCAACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGCCGTCATCGTCCTCCTCCTCGTCTAATATTTCAACTGGACTAGTCGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGGGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGCTCCTCTACCGCCCGATCCTTTAATTGGGATGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACCGGCGTTCGTCCTCCACCTCAACCACTTTATATGAGTAGCAGTGGAGGTTCGGGCTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCCTTCGGTTTCTCAAAGAGTACATTTACTTATGAGGAGTTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTTCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGCGAACGAGAATTTCAGGCTGAAGTTGATATCATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTCGTTTATGAGTTTGTTGCAAACAACACTTTGGAGTTCCATTTACATGGTAAAGGGCGGCCGACCATGGATTGGCAGACAAGACTTAAAATTGCTTTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAACATATTGTTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCCAAGTTTACTTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCCGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGTCCAGTCGATATGAGTAATACTTCCATGGAAGATAGTCTCGTGGACTGGGCTAGGCCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTTGATGCTTTGGTCGATCCAAGGATGCAAAACAACTACAACCACAACGAAATGGCTCGTATGGTTGCCTGCGCTGCTGCTTGTGTTCGTCATTCTGCCAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACACATCACTATCGGATCTCAACGAAGGAGTCAAACCCGGGCAGAGTACAGTGTACAGTTCTTATGGAAGCTCAGATTACGACACCCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGCACAGAATATGGAGCAAGCAGCGAATACAGCGGACCGACAAGCGAGTACGGGCTGTATCCTTCGGGGTCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAGGAGAGTGGAGGCTTCAGTGGACGCTCTTGA 2016 52.03 MSTPTPAPTSPPATNTTSPPPPTPSAAPPSTPTQPPPSTSPPPTTTPSPPPPSAATPPASQPPPTSAPPPATPSLPPPSTPQPTPPTASPSPPASTPPPSRPSSSPPPPSSTSPPAPPTGRSPPPPTSRTPSTPSRSPPPPSTPSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNAPLPPDPLIGMVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVANNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTVYSSYGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2621815 2625529 - Lsi11G002600.1 Lsi11g00260 673427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00260 671 MobiDBLite consensus disorder prediction 220 250 - -
Lsi11g00260 671 Gene3D Transferase(Phosphotransferase) domain 1 377 587 - -
Lsi11g00260 671 PRINTS Proline rich extensin signature 1 22 - -
Lsi11g00260 671 PRINTS Proline rich extensin signature 39 56 - -
Lsi11g00260 671 PRINTS Proline rich extensin signature 22 38 - -
Lsi11g00260 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Lsi11g00260 671 Gene3D Phosphorylase Kinase; domain 1 280 376 - -
Lsi11g00260 671 MobiDBLite consensus disorder prediction 1 145 - -
Lsi11g00260 671 MobiDBLite consensus disorder prediction 580 602 - -
Lsi11g00260 671 Pfam Protein tyrosine and serine/threonine kinase 306 574 IPR001245 GO:0004672|GO:0006468
Lsi11g00260 671 SUPERFAMILY Protein kinase-like (PK-like) 276 574 IPR011009 -
Lsi11g00260 671 MobiDBLite consensus disorder prediction 584 602 - -
Lsi11g00260 671 MobiDBLite consensus disorder prediction 624 671 - -
Lsi11g00260 671 SMART serkin_6 301 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00260 671 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Lsi11g00260 671 MobiDBLite consensus disorder prediction 625 653 - -
Lsi11g00260 671 MobiDBLite consensus disorder prediction 185 276 - -
Lsi11g00260 671 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 58 657 - -
Lsi11g00260 671 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 58 657 - -
Lsi11g00260 671 ProSiteProfiles Protein kinase domain profile. 301 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00260 671 MobiDBLite consensus disorder prediction 1 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00265 Lsi-Chr6:2982630 Lsi11g00260 Lsi-Chr11:2621815 5.80E-90 dispersed
Lsi07g00440 Lsi-Chr7:4686133 Lsi11g00260 Lsi-Chr11:2621815 3.87E-93 dispersed
Lsi07g00562 Lsi-Chr7:5966015 Lsi11g00260 Lsi-Chr11:2621815 7.21E-95 dispersed
Lsi11g00260 Lsi-Chr11:2621815 Lsi04g00311 Lsi-Chr4:3137175 2.72E-133 dispersed
Lsi01g01078 Lsi-Chr1:8950868 Lsi11g00260 Lsi-Chr11:2621815 1.84E-75 transposed
Lsi03g00221 Lsi-Chr3:2790686 Lsi11g00260 Lsi-Chr11:2621815 1.96E-164 transposed
Lsi03g01186 Lsi-Chr3:22280509 Lsi11g00260 Lsi-Chr11:2621815 6.84E-57 transposed
Lsi04g00550 Lsi-Chr4:5048319 Lsi11g00260 Lsi-Chr11:2621815 1.05E-162 transposed
Lsi05g00215 Lsi-Chr5:2930967 Lsi11g00260 Lsi-Chr11:2621815 1.15E-69 transposed
Lsi06g01108 Lsi-Chr6:21334888 Lsi11g00260 Lsi-Chr11:2621815 7.26E-85 transposed
Lsi06g01186 Lsi-Chr6:22147902 Lsi11g00260 Lsi-Chr11:2621815 1.47E-77 transposed
Lsi07g00526 Lsi-Chr7:5564512 Lsi11g00260 Lsi-Chr11:2621815 5.52E-64 transposed
Lsi08g00467 Lsi-Chr8:12398614 Lsi11g00260 Lsi-Chr11:2621815 6.98E-77 transposed
Lsi10g00357 Lsi-Chr10:5574081 Lsi11g00260 Lsi-Chr11:2621815 1.19E-115 transposed
Lsi10g00758 Lsi-Chr10:10394485 Lsi11g00260 Lsi-Chr11:2621815 8.31E-76 transposed
Lsi10g00903 Lsi-Chr10:13489550 Lsi11g00260 Lsi-Chr11:2621815 4.26E-59 transposed
Lsi11g00501 Lsi-Chr11:5305734 Lsi11g00260 Lsi-Chr11:2621815 1.05E-74 transposed
Lsi11g01430 Lsi-Chr11:22849358 Lsi11g00260 Lsi-Chr11:2621815 1.24E-74 transposed
Lsi11g00260 Lsi-Chr11:2621815 Lsi06g00871 Lsi-Chr6:18218127 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84016 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00260 - - bhj:120079307 951.429