Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00270 ATGTTGAAGTTTCTTCAAGTTTCCAGCCATGGCGGCCGAGGCCTTACTGACGCTGAAGCTCATTACATCCGTCAACGTCAACTCCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCGTCGTCGATCCTAAGCTTGTTTTTGAAAACGACAGAATCAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTCAAATCTCACTCGGAATTGGGTTGGATCTGATGTTTGTCACTACACAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCCTCGATCCGTACAGTCGCCGGAATTGACCTCAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTTCTCGTGGATCTTGCATTGTTCCATATAAACTCTAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACTTGAAGATGTTGTTCGAGTTGGATCTGAGTAACAATCGCTTTGCCGGAAAATTCCCTCGGGTGGTTCTTGAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTTGAAGGGACGGTACCTAAGGAGCTTTTCGATAAGGATTTGGACGCCATTTTCATCAACCACAACAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTAATTGTACTTGCTAATAACAAATTTCATGGGTGTGTGCCGGGGAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAGAATCTGACGGTGTTTGATGTGAGTTATAATGAGTTTTTTGGTAGTTTGCCGGAGACGATAGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGGAAGATTCCGGAGAGTATCTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAGGCGCCGTCGTGCTTGGCGTTGCCGGACTTTGATGACCGGAGGAACTGTATACCGGAGCGTCCGGTTCAACGCTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTCCCATCGCCATCGCCACCTGTTTACTCTCCTCCGCCACCCGAATCCGCTTCACATCCCATTTACCGACCACTCCCTCCGCCACCGCCATCCCCGTCTCCCCCTCCCCCGCCTGTTTACTCTCCTCCCCCGCCTCCCCCGCCTCCACCATCCCCACCACCCCCACCTCCCCCGTCTCCACCTCCGCCTTCTCCACCACCACCTTCCCCACCGCCACCATCACCCCCACCGCCGCCCCCACCGGTTTACTCTCCACCTCCACCATCACCACCACCACCATCTCCACCACCACCAGTTTACTCTCCGCCACCACCTCCACCATCTCCACCACCACCGGTTTACTCCCCGCCTCCACCTCCCCCACCATCGCCGCCACCACCGGCGCCGGTGTATTGCGTCCGACCATCACCCCCACCTCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCACCGCCCAACTCTCCACCACCCCCGCCATTGTACTCTCCTCCACCACCGCCCAACTCGCCGCCTCCTCCGCCACATTCACCTCCACCACCAATCTATCCTTACTTATCTCCCCCACCTCCTCCACCTGTCTATTCTCCCCCTCCACCGGTTTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCTCCGCCGCCACCGTGTATAGAGTATCATGAACCCCCACCCCCACCATCACCCTCACCGCCTTCGCCCATCCAATACCATCCTCCGCCATCTCCTTCACCACCACCCCCACCTTCACCCACCCCAGTTTACCATTCACCTCCTCCGCCATCTCCTTCACCACCACCCCCACCTTCACCCACCCCAGTTTACCATTCACCTCCTCCGCCGGTTTATTACTCTCCACCACCACCACCATCACCATCGCCGCCTCCGCCACCTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA 2226 54.4 MLKFLQVSSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPSNLTRNWVGSDVCHYTGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKMLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSYNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPERPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPSPPVYSPPPPESASHPIYRPLPPPPPSPSPPPPPVYSPPPPPPPPPSPPPPPPPSPPPPSPPPPSPPPPSPPPPPPPVYSPPPPSPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPPSPPPPAPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPLYSPPPPPNSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPSPIQYHPPPSPSPPPPPSPTPVYHSPPPPSPSPPPPPSPTPVYHSPPPPVYYSPPPPPSPSPPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPFY 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2740543 2743776 + Lsi11G002700.1 Lsi11g00270 673437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00270 741 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 13 415 - -
Lsi11g00270 741 Pfam Leucine rich repeat N-terminal domain 61 93 IPR013210 -
Lsi11g00270 741 MobiDBLite consensus disorder prediction 561 588 - -
Lsi11g00270 741 MobiDBLite consensus disorder prediction 630 687 - -
Lsi11g00270 741 PRINTS Proline rich extensin signature 437 462 - -
Lsi11g00270 741 PRINTS Proline rich extensin signature 373 394 - -
Lsi11g00270 741 PRINTS Proline rich extensin signature 395 411 - -
Lsi11g00270 741 PRINTS Proline rich extensin signature 419 436 - -
Lsi11g00270 741 Gene3D Ribonuclease Inhibitor 59 220 IPR032675 -
Lsi11g00270 741 Gene3D Ribonuclease Inhibitor 221 366 IPR032675 -
Lsi11g00270 741 Pfam Leucine rich repeat 131 186 IPR001611 GO:0005515
Lsi11g00270 741 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515
Lsi11g00270 741 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 415 - -
Lsi11g00270 741 MobiDBLite consensus disorder prediction 699 728 - -
Lsi11g00270 741 MobiDBLite consensus disorder prediction 397 520 - -
Lsi11g00270 741 SUPERFAMILY L domain-like 59 339 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00890 Lsi11g00270 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01631 Lsi-Chr5:23953552 Lsi11g00270 Lsi-Chr11:2740543 6.11E-149 dispersed
Lsi08g01492 Lsi-Chr8:23085250 Lsi11g00270 Lsi-Chr11:2740543 3.26E-71 dispersed
Lsi09g01583 Lsi-Chr9:23966231 Lsi11g00270 Lsi-Chr11:2740543 8.25E-137 dispersed
Lsi09g01584 Lsi-Chr9:23970908 Lsi11g00270 Lsi-Chr11:2740543 1.81E-136 dispersed
Lsi11g00211 Lsi-Chr11:2176957 Lsi11g00270 Lsi-Chr11:2740543 2.09E-92 dispersed
Lsi11g00270 Lsi-Chr11:2740543 Lsi11g01698 Lsi-Chr11:25165472 6.98E-122 dispersed
Lsi11g00270 Lsi-Chr11:2740543 Lsi06g00231 Lsi-Chr6:2653715 5.57E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00270 - - csv:101210261 770.0