Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00286 ATGGCTGCTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTTCTTCTGACTCAGTGGGTCGACTCGGAGCCGACTCAGGATAGACAAGCCCTTCTCGATTTCTTCTCTAAAACTCCTCACGCCAATCGGGTTCAATGGAATACTTCTAATTCCGTCTGTAATTGGGTTGGCGTTGAGTGCGATTCGAATCAGTCGTTTGTTTACTCTCTCCGTTTGCCTGGTGTTGGCCTCGTCGGACCGATTCCGCCCAATACAATCGGGAAATTGACTCAGCTCCGAGTTCTCAGCCTCCGTTCGAACCGTCTCTCTGGCGGGATCCCATCGGATTTTTCCAATTTAGTAATGCTGCGGAATCTGTATCTTCAGGACAATGCTTTCACCGGCGAGTTTCCGTCGAGTTTGACTCGGTTGACTCGGCTGACTCGGTTGGATTTGTCGTCGAACGAATTTTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACTCACTTGAGTGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCAAGTATCTCAGCCGTTAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGTTCGATTCCGAATTCATTAGCGAAATTCCCGGCATCTTCCTTCGCCGGAAACTTAGATCTCTGCGGCGGACCATTCCCACCCTGCAACCCACTCACTCCCTCTCCATCTCCGTCACAAAACCCCCCACCAGCCCACAGAAAATCGAAGAAACTCTCCACAGCAGCGATAATTGGAATCGTAATCGGCGCCGTTTTCGCAGCTTTTCTTCTCCTCCTCTTCCTAATCCTCTGCATTCGGCGGCGGTCCCGCAGACAACAGACGAAGTCAGCGAAGCCACCATCGGCGGTGGGAGCGGCGGCTCGAGCAATTCCAGTAGCGGAGGCCGGAACGTCGTCGTCGAAAGACGACATTACCGGAGGATCAGTGGAGGCAACGGAGAGGAACAAGCTGGTGTTCTTCGAAGGAGGGATTTACAACTTCGATTTGGAAGATTTGTTGAGGGCTTCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTAGTGACGAAGAAGGAATTCGAAACCCAAATGGAGATTTTAGGGAAAATTAAACATGAAAATGTGGTTCCTCTCAGAGCATTTTACTTCTCCAAAGATGAAAAACTGCTTGTTTATGATTATATCTCCACCGGAAGTTTGTCGGCCAGCCTCCACGGAAGCAGAGGCTCCGGCAGGACGCCGTTGGACTGGGATTCAAGAATGAGAATAGCACTAAGCACCGGCAGGGGTTTAGCCCATCTCCACCTCGCCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATCCTTCTCCGTCCGGACCACGACGCCTGCATCTCCGATTTCGGCCTAAACCCAGTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACAGGGCACCGGAGGTCGTCGAAACTCGAAAAGTCACATTCAAATCAGACGTTTACAGCTACGGTGTTCTCCTCCTCGAGCTCCTGACCGGGAAAGCCCCCAACCAGCAATCCCTCGGCGAGGACGGAATCGACCTTCCCCGGTGGGTCCAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCGGAGCTGATGCGGTTCCATAACATTGAAGAAGAGATGGTTCAATTACTGCAGATCGCAATGTCCTGCGTTTCGACAGTTCCCGATCAGCGGCCGGCCATGCCGGAAGTTGTACGAATGATCGAAGATATGAACAGTCATAGAAGCGAGACCGACGACGGGTTGCGCCAGTCTTCCGACGACCCTTCGAAAGGATCGGACGTGAACACGCCGCCGGCGGAATCTAGAACTCCGCCGAGAGTGACGCCGTAG 1959 53.09 MAAAISLCSVFLLLLLTQWVDSEPTQDRQALLDFFSKTPHANRVQWNTSNSVCNWVGVECDSNQSFVYSLRLPGVGLVGPIPPNTIGKLTQLRVLSLRSNRLSGGIPSDFSNLVMLRNLYLQDNAFTGEFPSSLTRLTRLTRLDLSSNEFSGPIPPSVDNLTHLSGIFLQNNGFSGSLPSISAVNLTNFNVSNNKLNGSIPNSLAKFPASSFAGNLDLCGGPFPPCNPLTPSPSPSQNPPPAHRKSKKLSTAAIIGIVIGAVFAAFLLLLFLILCIRRRSRRQQTKSAKPPSAVGAAARAIPVAEAGTSSSKDDITGGSVEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIALSTGRGLAHLHLAGKVVHGNIKSSNILLRPDHDACISDFGLNPVFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2954323 2959125 + Lsi11G002860.1 Lsi11g00286 673453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00286 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Lsi11g00286 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Lsi11g00286 652 MobiDBLite consensus disorder prediction 226 240 - -
Lsi11g00286 652 MobiDBLite consensus disorder prediction 226 245 - -
Lsi11g00286 652 CDD STKc_IRAK 351 613 - -
Lsi11g00286 652 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Lsi11g00286 652 MobiDBLite consensus disorder prediction 613 629 - -
Lsi11g00286 652 SUPERFAMILY Protein kinase-like (PK-like) 349 610 IPR011009 -
Lsi11g00286 652 MobiDBLite consensus disorder prediction 630 644 - -
Lsi11g00286 652 Gene3D Ribonuclease Inhibitor 186 226 IPR032675 -
Lsi11g00286 652 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Lsi11g00286 652 MobiDBLite consensus disorder prediction 613 652 - -
Lsi11g00286 652 PANTHER RECEPTOR-LIKE KINASE 9 640 - -
Lsi11g00286 652 PANTHER OS05G0588300 PROTEIN 9 640 - -
Lsi11g00286 652 Pfam Protein kinase domain 348 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00286 652 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Lsi11g00286 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515
Lsi11g00286 652 SUPERFAMILY L domain-like 25 207 - -
Lsi11g00286 652 ProSiteProfiles Protein kinase domain profile. 345 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00909 Lsi11g00286 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01548 Lsi-Chr2:21338438 Lsi11g00286 Lsi-Chr11:2954323 1.82E-92 dispersed
Lsi04g02208 Lsi-Chr4:29120184 Lsi11g00286 Lsi-Chr11:2954323 4.94E-107 dispersed
Lsi01g00962 Lsi-Chr1:7807479 Lsi11g00286 Lsi-Chr11:2954323 1.46E-90 transposed
Lsi01g01628 Lsi-Chr1:14646194 Lsi11g00286 Lsi-Chr11:2954323 0 transposed
Lsi02g02066 Lsi-Chr2:26822626 Lsi11g00286 Lsi-Chr11:2954323 2.56E-82 transposed
Lsi03g00940 Lsi-Chr3:17991265 Lsi11g00286 Lsi-Chr11:2954323 8.76E-49 transposed
Lsi04g00237 Lsi-Chr4:2405835 Lsi11g00286 Lsi-Chr11:2954323 1.54E-166 transposed
Lsi04g01054 Lsi-Chr4:12428994 Lsi11g00286 Lsi-Chr11:2954323 5.33E-17 transposed
Lsi04g01187 Lsi-Chr4:17701397 Lsi11g00286 Lsi-Chr11:2954323 1.48E-41 transposed
Lsi04g01188 Lsi-Chr4:17704766 Lsi11g00286 Lsi-Chr11:2954323 1.19E-71 transposed
Lsi09g00907 Lsi-Chr9:11033095 Lsi11g00286 Lsi-Chr11:2954323 6.37E-166 transposed
Lsi10g01489 Lsi-Chr10:19061529 Lsi11g00286 Lsi-Chr11:2954323 0 transposed
Lsi05g00350 Lsi-Chr5:4467542 Lsi11g00286 Lsi-Chr11:2954323 0 transposed
Lsi11g00286 Lsi-Chr11:2954323 Lsi06g00909 Lsi-Chr6:18797364 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84017 PF00069 Pkinase 1.90E-37 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00286 - - csv:101205802 1102.81