Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00296 ATGGTGGGTTGGATTTTTTGTTGGTTTTTGTTAGTGGTGGTTCTAAGGGCGGCAGTGGTTCTGTGGTGGCGGCCGAGAAGAATTGAAGAACATTTTTTCCGGCAAGGAATTCGTGGCCCTCCTTATCGTTTCTTCATCGGAAATGTTAAGGAACTTGTCGGAATGATGATTAAAGCTTCTTCTGATCATTCTTTTCCTAATTCTTCTCATAATATTCTCCCTCGTGTTCTTCCTTTTTATCATCACTGGAAGAAAATTTATGGGTCAAAATTTCTAGTGTGGTTTGGGCCAACGGTGAGATTGGCAGTGTCTGATCCAGACTTGATTCGAGAAATCTTCACGTCAAAATCAGAATTCTGTGAGAAAAATGAACCTCACCCACTTGTTAAACAGCTAGAAGGTGATGGTCTTCTCAGTCTCAAAGGCCAAAAATGGGCTCTTCATCGCAAGATTATCTCTCCTTCTTTCCACATGGACAATCTCAAATTGTTGATTCCAGTGATGGCAAAAAGTGTTGTGGACATGTTGGAGAAATGGTCAGCATTAATGACGTCATCAGATTCCGGTGAGGTGGAAATTGAAGTTTCCGAATGGTTCCAAACCCTAACTGAAGATGTCATCACTAGGACAGCATTTGGCTCTAGCTATGAAGATGGAAAAGCCATTTTTCGCTTACAAGCTCAACAAATGGTCCTTGCTTCTCAAGCCTTTGAAAAAGTTTTCATCCCTGGCTATAGGTTCTTACCTACGAGAACAAACGTGAATTCGTGGAGATTGGATAGAGAAATAAGGAAATCGTTAATGAAATTAATCGATCGACGACGTGAGAATTCGATCGAGACGAGCTCGAAGGATTTACTAGGGTTAATGATTAGAGCATCAAAGTCTTCTCCATCATCTACAATCACTGTTAATGACATTGTTGAAGAGTGCAAGGGGTTTTTCTTTGCTGGCAAACAGACCACATCCAATTTGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAGGTACAGGCACGTGATGAGGTACTAAGGGTGTGTGGAGCACGTGACATACCCTCCAAAGATGATGTTACAAAGCTCAAAATGTTGAGTATGATCATCAACGAATCATTACGGTTATATCCACCGACAGTGGCAACTATTCGACAAGCGAAAGTTGACGTGGAGCTTGGTGGTTACATGATTCCACGTGGCACTGAGTTATTAATCCCGATTTTAGCTGTTCATCATGATCAAACGATATGGGGAAATGATGTGAACGAGTTCAATCCAGGGCGATTCGCAGAAGGTGTTGCAAAGGCAGCCAATCATCGAGTCGGGTTCATTCCTTTCGGGTTAGGAGCGCGAACCTGTATTGGCCAAAACTTGGCTATATTGCAAGCAAAGTTGGTTCTTGCACTCATACTTCAAAGATTCTCTTTTCAATTGGGACCCTCTTATCAACATTCACCAGCGGTTCAAATGCTACTTTATCCAAGACATGGTGCACCTATTATCTTTAAGAAATTATCCACTCCATTGGTCCATCAAGATCAACGGTCATGA 1560 42.31 MVGWIFCWFLLVVVLRAAVVLWWRPRRIEEHFFRQGIRGPPYRFFIGNVKELVGMMIKASSDHSFPNSSHNILPRVLPFYHHWKKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSEFCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLKLLIPVMAKSVVDMLEKWSALMTSSDSGEVEIEVSEWFQTLTEDVITRTAFGSSYEDGKAIFRLQAQQMVLASQAFEKVFIPGYRFLPTRTNVNSWRLDREIRKSLMKLIDRRRENSIETSSKDLLGLMIRASKSSPSSTITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQVQARDEVLRVCGARDIPSKDDVTKLKMLSMIINESLRLYPPTVATIRQAKVDVELGGYMIPRGTELLIPILAVHHDQTIWGNDVNEFNPGRFAEGVAKAANHRVGFIPFGLGARTCIGQNLAILQAKLVLALILQRFSFQLGPSYQHSPAVQMLLYPRHGAPIIFKKLSTPLVHQDQRS 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3063954 3067504 + Lsi11G002960.1 Lsi11g00296 673463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00296 519 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PANTHER CYTOCHROMEA2 5 503 - -
Lsi11g00296 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Lsi11g00296 519 PANTHER CYTOCHROME P450 FAMILY MEMBER 5 503 - -
Lsi11g00296 519 Pfam Cytochrome P450 79 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS E-class P450 group I signature 84 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 Gene3D Cytochrome P450 22 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00296 519 SUPERFAMILY Cytochrome P450 71 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00938 Lsi11g00296 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00243 Lsi-Chr3:3057964 Lsi11g00296 Lsi-Chr11:3063954 5.93E-110 dispersed
Lsi04g01646 Lsi-Chr4:23929052 Lsi11g00296 Lsi-Chr11:3063954 3.43E-53 dispersed
Lsi05g01218 Lsi-Chr5:20088120 Lsi11g00296 Lsi-Chr11:3063954 1.03E-27 dispersed
Lsi06g00316 Lsi-Chr6:3599628 Lsi11g00296 Lsi-Chr11:3063954 2.24E-124 dispersed
Lsi09g00466 Lsi-Chr9:4882351 Lsi11g00296 Lsi-Chr11:3063954 6.67E-99 dispersed
Lsi01g01277 Lsi-Chr1:11033086 Lsi11g00296 Lsi-Chr11:3063954 6.04E-40 transposed
Lsi05g00806 Lsi-Chr5:11988067 Lsi11g00296 Lsi-Chr11:3063954 6.30E-34 transposed
Lsi11g00296 Lsi-Chr11:3063954 Lsi06g00938 Lsi-Chr6:19296181 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00296 K15639 - csv:101208789 1018.84