Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00296 | ATGGTGGGTTGGATTTTTTGTTGGTTTTTGTTAGTGGTGGTTCTAAGGGCGGCAGTGGTTCTGTGGTGGCGGCCGAGAAGAATTGAAGAACATTTTTTCCGGCAAGGAATTCGTGGCCCTCCTTATCGTTTCTTCATCGGAAATGTTAAGGAACTTGTCGGAATGATGATTAAAGCTTCTTCTGATCATTCTTTTCCTAATTCTTCTCATAATATTCTCCCTCGTGTTCTTCCTTTTTATCATCACTGGAAGAAAATTTATGGGTCAAAATTTCTAGTGTGGTTTGGGCCAACGGTGAGATTGGCAGTGTCTGATCCAGACTTGATTCGAGAAATCTTCACGTCAAAATCAGAATTCTGTGAGAAAAATGAACCTCACCCACTTGTTAAACAGCTAGAAGGTGATGGTCTTCTCAGTCTCAAAGGCCAAAAATGGGCTCTTCATCGCAAGATTATCTCTCCTTCTTTCCACATGGACAATCTCAAATTGTTGATTCCAGTGATGGCAAAAAGTGTTGTGGACATGTTGGAGAAATGGTCAGCATTAATGACGTCATCAGATTCCGGTGAGGTGGAAATTGAAGTTTCCGAATGGTTCCAAACCCTAACTGAAGATGTCATCACTAGGACAGCATTTGGCTCTAGCTATGAAGATGGAAAAGCCATTTTTCGCTTACAAGCTCAACAAATGGTCCTTGCTTCTCAAGCCTTTGAAAAAGTTTTCATCCCTGGCTATAGGTTCTTACCTACGAGAACAAACGTGAATTCGTGGAGATTGGATAGAGAAATAAGGAAATCGTTAATGAAATTAATCGATCGACGACGTGAGAATTCGATCGAGACGAGCTCGAAGGATTTACTAGGGTTAATGATTAGAGCATCAAAGTCTTCTCCATCATCTACAATCACTGTTAATGACATTGTTGAAGAGTGCAAGGGGTTTTTCTTTGCTGGCAAACAGACCACATCCAATTTGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAGGTACAGGCACGTGATGAGGTACTAAGGGTGTGTGGAGCACGTGACATACCCTCCAAAGATGATGTTACAAAGCTCAAAATGTTGAGTATGATCATCAACGAATCATTACGGTTATATCCACCGACAGTGGCAACTATTCGACAAGCGAAAGTTGACGTGGAGCTTGGTGGTTACATGATTCCACGTGGCACTGAGTTATTAATCCCGATTTTAGCTGTTCATCATGATCAAACGATATGGGGAAATGATGTGAACGAGTTCAATCCAGGGCGATTCGCAGAAGGTGTTGCAAAGGCAGCCAATCATCGAGTCGGGTTCATTCCTTTCGGGTTAGGAGCGCGAACCTGTATTGGCCAAAACTTGGCTATATTGCAAGCAAAGTTGGTTCTTGCACTCATACTTCAAAGATTCTCTTTTCAATTGGGACCCTCTTATCAACATTCACCAGCGGTTCAAATGCTACTTTATCCAAGACATGGTGCACCTATTATCTTTAAGAAATTATCCACTCCATTGGTCCATCAAGATCAACGGTCATGA | 1560 | 42.31 | MVGWIFCWFLLVVVLRAAVVLWWRPRRIEEHFFRQGIRGPPYRFFIGNVKELVGMMIKASSDHSFPNSSHNILPRVLPFYHHWKKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSEFCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLKLLIPVMAKSVVDMLEKWSALMTSSDSGEVEIEVSEWFQTLTEDVITRTAFGSSYEDGKAIFRLQAQQMVLASQAFEKVFIPGYRFLPTRTNVNSWRLDREIRKSLMKLIDRRRENSIETSSKDLLGLMIRASKSSPSSTITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQVQARDEVLRVCGARDIPSKDDVTKLKMLSMIINESLRLYPPTVATIRQAKVDVELGGYMIPRGTELLIPILAVHHDQTIWGNDVNEFNPGRFAEGVAKAANHRVGFIPFGLGARTCIGQNLAILQAKLVLALILQRFSFQLGPSYQHSPAVQMLLYPRHGAPIIFKKLSTPLVHQDQRS | 519 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3063954 | 3067504 | + | Lsi11G002960.1 | Lsi11g00296 | 673463 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00296 | 519 | PRINTS | P450 superfamily signature | 317 | 334 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | P450 superfamily signature | 456 | 467 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | P450 superfamily signature | 370 | 381 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PANTHER | CYTOCHROMEA2 | 5 | 503 | - | - | |
Lsi11g00296 | 519 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506|GO:0016705 | |
Lsi11g00296 | 519 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 5 | 503 | - | - | |
Lsi11g00296 | 519 | Pfam | Cytochrome P450 | 79 | 486 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | E-class P450 group I signature | 84 | 103 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | E-class P450 group I signature | 326 | 352 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | E-class P450 group I signature | 306 | 323 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | PRINTS | E-class P450 group I signature | 202 | 220 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | Gene3D | Cytochrome P450 | 22 | 511 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi11g00296 | 519 | SUPERFAMILY | Cytochrome P450 | 71 | 506 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi06g00938 | Lsi11g00296 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00243 | Lsi-Chr3:3057964 | Lsi11g00296 | Lsi-Chr11:3063954 | 5.93E-110 | dispersed | |
Lsi04g01646 | Lsi-Chr4:23929052 | Lsi11g00296 | Lsi-Chr11:3063954 | 3.43E-53 | dispersed | |
Lsi05g01218 | Lsi-Chr5:20088120 | Lsi11g00296 | Lsi-Chr11:3063954 | 1.03E-27 | dispersed | |
Lsi06g00316 | Lsi-Chr6:3599628 | Lsi11g00296 | Lsi-Chr11:3063954 | 2.24E-124 | dispersed | |
Lsi09g00466 | Lsi-Chr9:4882351 | Lsi11g00296 | Lsi-Chr11:3063954 | 6.67E-99 | dispersed | |
Lsi01g01277 | Lsi-Chr1:11033086 | Lsi11g00296 | Lsi-Chr11:3063954 | 6.04E-40 | transposed | |
Lsi05g00806 | Lsi-Chr5:11988067 | Lsi11g00296 | Lsi-Chr11:3063954 | 6.30E-34 | transposed | |
Lsi11g00296 | Lsi-Chr11:3063954 | Lsi06g00938 | Lsi-Chr6:19296181 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00296 | K15639 | - | csv:101208789 | 1018.84 |