Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00302 | ATGATGGCCGGAAGCATAGCCAGAGACGAGTGGTCCGATTACGACAGCAGTTGTTCCTCCTCCATAACCGTCCCGGACTCCACCCGCAGCTGGATGAGTAACCTCAGTTTCGGAAGCCGGCGCCGAAGCAGTAGCTCAGCCGCAGACGGCGGCGTTGAGATGATGACGACAACAACAACAACAGCAACATTACCAGTAGTAAAACTGACGATGAAGCCACACAAGGCGAATGAAGTGGGATGGGAGGCGATGCGGTGGCTCCGGGGAGTGAAAGGGGAAGTGGGGTTAGAGCATTTCCGGCTGCTACGGCGGGTGGGGAGTGGAGATATTGGGAATGTTTATTTATGTGAGATAAGGAATCCAATGGTGGGATTGCCAAAGTGCTTTTATGCAATGAAAGTGGTTGATAGAGAAGCGGTTTGTGTAAGGAATAAAGAGAGAAGGGCAGATATGGAAAAGGAAATATTGAAAGTGCTTGATCATCCTTTTTTGCCTACTCTTTATGCTCATTTTGAAGCTTCTCATTACTCTTGTTTGCTTATGGAGTTTTGCCCTGGTGGTGATTTGTATGCTGCTCGCCAACGTCAACCCAATAAACGTTTCTCCATTTCTTCTGCTAAAGATTTAAAGCCGGAAAACGTTTTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGCCTTAAATGGGACGTCGTTCCAAAGCTCATCCGTTGCCGAACCACCGCCTCCGACGCCACCACCGAACGCCACGTCAGATCCTACTCCACCTCAACCACCTCCTGCGCTGCCGCCCCCATTCAACCCGTCCTCTCCTGTTTCTCCATTGCCCGTCGCAAAAAATCCACCACCGTAACTACCATCACCGAACACGCCGCCGCACCCTCCGCCGTGTACGGCGGCGACAGCGACGGAGAGGGCGAGGAATTCGACCCAGAACCAGAATTAATAGCGGAACCAATAAACGCTCGGTCGAAATCATTCGTCGGAACCCACGAGTATTTGGCGCCGGAGGTGATTTCCGGGCAAGGGCATGGCAGCGGCGTGGATTGGTGGACATTGGGAATATTCTTATACGAAATGTTGTACGGAAAAACACCATTTAAAGGGGAAAACAACGAGAAGACATTAATGAACATTTTGAAGCAGCCATTAAGATTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATTTAATCAAGAAGCTTTTGGTGAAAAATCCAAAAAAAAGAATTGGAAGTTTAAAGGGTTCAGTTGAAATCAAAAGACATGATTTTTTCAAAGGACTCAATTGGGCTTTAATTCGTTCCGTACGACCTCCACAAATCCCCAACAATAACCTTAATTACTCCAAATACCCTTCTAATTACTTACCCAAATTGAGCAAGAAACAAAGACAACAACCTTACCAAATCCCTAATCACCATTTTGATTATTTCTAA | 1476 | 46.95 | MMAGSIARDEWSDYDSSCSSSITVPDSTRSWMSNLSFGSRRRSSSSAADGGVEMMTTTTTTATLPVVKLTMKPHKANEVGWEAMRWLRGVKGEVGLEHFRLLRRVGSGDIGNVYLCEIRNPMVGLPKCFYAMKVVDREAVCVRNKERRADMEKEILKVLDHPFLPTLYAHFEASHYSCLLMEFCPGGDLYAARQRQPNKRFSISSAKDLKPENVLVREDGHIMLSDFDLCLKWDVVPKLIRCRTTASDATTERHVRSYSTSTTSCAAAPIQPVLSCFSIARRKKSTTVTTITEHAAAPSAVYGGDSDGEGEEFDPEPELIAEPINARSKSFVGTHEYLAPEVISGQGHGSGVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLRFPRIGFSSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSVEIKRHDFFKGLNWALIRSVRPPQIPNNNLNYSKYPSNYLPKLSKKQRQQPYQIPNHHFDYF | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3127972 | 3130486 | - | Lsi11G003020.1 | Lsi11g00302 | 673469 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00302 | 491 | Gene3D | Phosphorylase Kinase; domain 1 | 51 | 210 | - | - | |
Lsi11g00302 | 491 | PANTHER | FLIPPASE KINASE 1-RELATED | 7 | 207 | - | - | |
Lsi11g00302 | 491 | ProSiteProfiles | Protein kinase domain profile. | 99 | 438 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00302 | 491 | Gene3D | Transferase(Phosphotransferase) domain 1 | 326 | 456 | - | - | |
Lsi11g00302 | 491 | PANTHER | PROTEIN KINASE PINOID 2 | 207 | 491 | - | - | |
Lsi11g00302 | 491 | SMART | serkin_6 | 99 | 438 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00302 | 491 | PANTHER | FLIPPASE KINASE 1-RELATED | 207 | 491 | - | - | |
Lsi11g00302 | 491 | SUPERFAMILY | Protein kinase-like (PK-like) | 81 | 474 | IPR011009 | - | |
Lsi11g00302 | 491 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Lsi11g00302 | 491 | Pfam | Protein kinase domain | 100 | 195 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00302 | 491 | Pfam | Protein kinase domain | 328 | 438 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00302 | 491 | Gene3D | Transferase(Phosphotransferase) domain 1 | 211 | 296 | - | - | |
Lsi11g00302 | 491 | PANTHER | PROTEIN KINASE PINOID 2 | 7 | 207 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g01180 | Lsi-Chr10:16085006 | Lsi11g00302 | Lsi-Chr11:3127972 | 7.35E-113 | dispersed | |
Lsi11g00302 | Lsi-Chr11:3127972 | Lsi10g01321 | Lsi-Chr10:17417465 | 2.21E-70 | dispersed | |
Lsi11g00302 | Lsi-Chr11:3127972 | Lsi01g00506 | Lsi-Chr1:4134269 | 2.50E-128 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84018 | PF00069 | Pkinase | 4.90E-22 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00302 | K08286 | - | csv:101202905 | 813.527 |