Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00302 ATGATGGCCGGAAGCATAGCCAGAGACGAGTGGTCCGATTACGACAGCAGTTGTTCCTCCTCCATAACCGTCCCGGACTCCACCCGCAGCTGGATGAGTAACCTCAGTTTCGGAAGCCGGCGCCGAAGCAGTAGCTCAGCCGCAGACGGCGGCGTTGAGATGATGACGACAACAACAACAACAGCAACATTACCAGTAGTAAAACTGACGATGAAGCCACACAAGGCGAATGAAGTGGGATGGGAGGCGATGCGGTGGCTCCGGGGAGTGAAAGGGGAAGTGGGGTTAGAGCATTTCCGGCTGCTACGGCGGGTGGGGAGTGGAGATATTGGGAATGTTTATTTATGTGAGATAAGGAATCCAATGGTGGGATTGCCAAAGTGCTTTTATGCAATGAAAGTGGTTGATAGAGAAGCGGTTTGTGTAAGGAATAAAGAGAGAAGGGCAGATATGGAAAAGGAAATATTGAAAGTGCTTGATCATCCTTTTTTGCCTACTCTTTATGCTCATTTTGAAGCTTCTCATTACTCTTGTTTGCTTATGGAGTTTTGCCCTGGTGGTGATTTGTATGCTGCTCGCCAACGTCAACCCAATAAACGTTTCTCCATTTCTTCTGCTAAAGATTTAAAGCCGGAAAACGTTTTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGCCTTAAATGGGACGTCGTTCCAAAGCTCATCCGTTGCCGAACCACCGCCTCCGACGCCACCACCGAACGCCACGTCAGATCCTACTCCACCTCAACCACCTCCTGCGCTGCCGCCCCCATTCAACCCGTCCTCTCCTGTTTCTCCATTGCCCGTCGCAAAAAATCCACCACCGTAACTACCATCACCGAACACGCCGCCGCACCCTCCGCCGTGTACGGCGGCGACAGCGACGGAGAGGGCGAGGAATTCGACCCAGAACCAGAATTAATAGCGGAACCAATAAACGCTCGGTCGAAATCATTCGTCGGAACCCACGAGTATTTGGCGCCGGAGGTGATTTCCGGGCAAGGGCATGGCAGCGGCGTGGATTGGTGGACATTGGGAATATTCTTATACGAAATGTTGTACGGAAAAACACCATTTAAAGGGGAAAACAACGAGAAGACATTAATGAACATTTTGAAGCAGCCATTAAGATTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATTTAATCAAGAAGCTTTTGGTGAAAAATCCAAAAAAAAGAATTGGAAGTTTAAAGGGTTCAGTTGAAATCAAAAGACATGATTTTTTCAAAGGACTCAATTGGGCTTTAATTCGTTCCGTACGACCTCCACAAATCCCCAACAATAACCTTAATTACTCCAAATACCCTTCTAATTACTTACCCAAATTGAGCAAGAAACAAAGACAACAACCTTACCAAATCCCTAATCACCATTTTGATTATTTCTAA 1476 46.95 MMAGSIARDEWSDYDSSCSSSITVPDSTRSWMSNLSFGSRRRSSSSAADGGVEMMTTTTTTATLPVVKLTMKPHKANEVGWEAMRWLRGVKGEVGLEHFRLLRRVGSGDIGNVYLCEIRNPMVGLPKCFYAMKVVDREAVCVRNKERRADMEKEILKVLDHPFLPTLYAHFEASHYSCLLMEFCPGGDLYAARQRQPNKRFSISSAKDLKPENVLVREDGHIMLSDFDLCLKWDVVPKLIRCRTTASDATTERHVRSYSTSTTSCAAAPIQPVLSCFSIARRKKSTTVTTITEHAAAPSAVYGGDSDGEGEEFDPEPELIAEPINARSKSFVGTHEYLAPEVISGQGHGSGVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLRFPRIGFSSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSVEIKRHDFFKGLNWALIRSVRPPQIPNNNLNYSKYPSNYLPKLSKKQRQQPYQIPNHHFDYF 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3127972 3130486 - Lsi11G003020.1 Lsi11g00302 673469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00302 491 Gene3D Phosphorylase Kinase; domain 1 51 210 - -
Lsi11g00302 491 PANTHER FLIPPASE KINASE 1-RELATED 7 207 - -
Lsi11g00302 491 ProSiteProfiles Protein kinase domain profile. 99 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00302 491 Gene3D Transferase(Phosphotransferase) domain 1 326 456 - -
Lsi11g00302 491 PANTHER PROTEIN KINASE PINOID 2 207 491 - -
Lsi11g00302 491 SMART serkin_6 99 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00302 491 PANTHER FLIPPASE KINASE 1-RELATED 207 491 - -
Lsi11g00302 491 SUPERFAMILY Protein kinase-like (PK-like) 81 474 IPR011009 -
Lsi11g00302 491 MobiDBLite consensus disorder prediction 1 24 - -
Lsi11g00302 491 Pfam Protein kinase domain 100 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00302 491 Pfam Protein kinase domain 328 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00302 491 Gene3D Transferase(Phosphotransferase) domain 1 211 296 - -
Lsi11g00302 491 PANTHER PROTEIN KINASE PINOID 2 7 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01180 Lsi-Chr10:16085006 Lsi11g00302 Lsi-Chr11:3127972 7.35E-113 dispersed
Lsi11g00302 Lsi-Chr11:3127972 Lsi10g01321 Lsi-Chr10:17417465 2.21E-70 dispersed
Lsi11g00302 Lsi-Chr11:3127972 Lsi01g00506 Lsi-Chr1:4134269 2.50E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84018 PF00069 Pkinase 4.90E-22 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00302 K08286 - csv:101202905 813.527