Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00320 | ATGGTGCCATCAAAGAAGTTTAGAGGGGTAAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCCTACGATCAGGCTGCCGTGTTAATGAGCGGCCGGAACGCGAAAACCAACTTTCCGATGAGCCAAATGGCGGCGCCGGAATTAGAAAACCCCGACAATAATAATAATAATAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTCCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAAATCCTCCGCCGCCGCCGTACGCGGCGGCGACGACGATGGTGGGCGGTTGAGGAAGAATAAAAAGATTAGTGGTTGTTTTTCTGGTTTGATCTCGTCGGAAGGTGGTGGTGCATTAATGGCGGCGAGTGGGACCCACATGAGGAACTTGGAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATCATCAAGGGGAAGCAACCTTTTTACCCTCTCTAATTTAA | 726 | 49.72 | MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQMAAPELENPDNNNNNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTKSSAAAVRGGDDDGGRLRKNKKISGCFSGLISSEGGGALMAASGTHMRNLEMDEEERIALQMIEELLSRNYGNPSEIIQVQDHHQGEATFLPSLI | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3283759 | 3286222 | - | Lsi11G003200.1 | Lsi11g00320 | 673487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00320 | 241 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 222 | - | - | |
Lsi11g00320 | 241 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00320 | 241 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi11g00320 | 241 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00320 | 241 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00320 | 241 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00320 | 241 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
Lsi11g00320 | 241 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g00320 | 241 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 1 | 222 | - | - | |
Lsi11g00320 | 241 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi06g00969 | Lsi11g00320 | CCT | |
Lsi06g00969 | Lsi11g00320 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01234 | Lsi-Chr8:20802008 | Lsi11g00320 | Lsi-Chr11:3283759 | 7.56E-34 | dispersed | |
Lsi11g00320 | Lsi-Chr11:3283759 | Lsi04g02049 | Lsi-Chr4:27600605 | 1.87E-22 | dispersed | |
Lsi11g00320 | Lsi-Chr11:3283759 | Lsi04g02133 | Lsi-Chr4:28467155 | 1.14E-73 | wgd | |
Lsi11g00320 | Lsi-Chr11:3283759 | Lsi06g00969 | Lsi-Chr6:19664746 | 1.60E-77 | wgd | |
Lsi11g00320 | Lsi-Chr11:3283759 | Lsi07g00465 | Lsi-Chr7:4943990 | 4.10E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26143 | PF00847 | AP2 | 3.50E-12 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00320 | - | - | bhj:120080144 | 380.178 |