Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00320 ATGGTGCCATCAAAGAAGTTTAGAGGGGTAAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCCTACGATCAGGCTGCCGTGTTAATGAGCGGCCGGAACGCGAAAACCAACTTTCCGATGAGCCAAATGGCGGCGCCGGAATTAGAAAACCCCGACAATAATAATAATAATAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTCCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAAATCCTCCGCCGCCGCCGTACGCGGCGGCGACGACGATGGTGGGCGGTTGAGGAAGAATAAAAAGATTAGTGGTTGTTTTTCTGGTTTGATCTCGTCGGAAGGTGGTGGTGCATTAATGGCGGCGAGTGGGACCCACATGAGGAACTTGGAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATCATCAAGGGGAAGCAACCTTTTTACCCTCTCTAATTTAA 726 49.72 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQMAAPELENPDNNNNNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTKSSAAAVRGGDDDGGRLRKNKKISGCFSGLISSEGGGALMAASGTHMRNLEMDEEERIALQMIEELLSRNYGNPSEIIQVQDHHQGEATFLPSLI 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3283759 3286222 - Lsi11G003200.1 Lsi11g00320 673487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00320 241 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 222 - -
Lsi11g00320 241 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lsi11g00320 241 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lsi11g00320 241 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lsi11g00320 241 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lsi11g00320 241 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lsi11g00320 241 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Lsi11g00320 241 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lsi11g00320 241 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 222 - -
Lsi11g00320 241 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00969 Lsi11g00320 CCT
Lsi06g00969 Lsi11g00320 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01234 Lsi-Chr8:20802008 Lsi11g00320 Lsi-Chr11:3283759 7.56E-34 dispersed
Lsi11g00320 Lsi-Chr11:3283759 Lsi04g02049 Lsi-Chr4:27600605 1.87E-22 dispersed
Lsi11g00320 Lsi-Chr11:3283759 Lsi04g02133 Lsi-Chr4:28467155 1.14E-73 wgd
Lsi11g00320 Lsi-Chr11:3283759 Lsi06g00969 Lsi-Chr6:19664746 1.60E-77 wgd
Lsi11g00320 Lsi-Chr11:3283759 Lsi07g00465 Lsi-Chr7:4943990 4.10E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26143 PF00847 AP2 3.50E-12 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00320 - - bhj:120080144 380.178