Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00331 ATGGCGGCGAAATCGATGTTCGCGGCGGTGTTTCTGCTACTTGCGGTGGTTGCTCCTCCGCGAAGGGCGTCCGCCGCCACTCACAACGTCGGCGATTCGCTTGGCTGGACCATCCCTCCCAATCCTTCTACTTATTCCAATTGGGCCTCCACTAAAACGTTTCTCGTCGGCGACATTCTCTTTTTCAATTTCACCACCGGACAGCACGACGTGACGGAAGTGACGAAGGCCGCATTAGACTCCTGCAGCAGCAGCAACCCCATCTCCGCCGTGAGAAGCGGCCCGGCGAGTATTACACTCTCGGCAGCCGGCACCCGCCACTTCATCTGCTCGTTTTCCGGCCACTGCGGCTTCGGCCAGAAGCTCTCCGTCAACGTCCGATCACAATCTTCTTCGCCGCCGACCGCCTCCCCTTCACCCTCACCCAAATCCAGCACTCCCGTTTCGCCGACGCCGTCGCCACACACCGGTCGGCCGCCGAAGGCCTCTCCTCCGACAGCCACTCCGCCGGAAACCGCCACTCCTCCGCCGTCAAACATCGCTCCTTCTACTCAGTCGCCGACGACCGCCCCGCCTCCGCCCAACTCCGCCAACTCCCTCGGCGGTTTCGGCCTCTTTTTCTCCGCCGGTTTGGCGATTATGGTTGCTCTGATTTGA 657 61.49 MAAKSMFAAVFLLLAVVAPPRRASAATHNVGDSLGWTIPPNPSTYSNWASTKTFLVGDILFFNFTTGQHDVTEVTKAALDSCSSSNPISAVRSGPASITLSAAGTRHFICSFSGHCGFGQKLSVNVRSQSSSPPTASPSPSPKSSTPVSPTPSPHTGRPPKASPPTATPPETATPPPSNIAPSTQSPTTAPPPPNSANSLGGFGLFFSAGLAIMVALI 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3428249 3430530 + Lsi11G003310.1 Lsi11g00331 673498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00331 218 MobiDBLite consensus disorder prediction 126 196 - -
Lsi11g00331 218 SUPERFAMILY Cupredoxins 24 128 IPR008972 -
Lsi11g00331 218 ProSiteProfiles Phytocyanin domain profile. 26 128 IPR003245 GO:0009055
Lsi11g00331 218 MobiDBLite consensus disorder prediction 135 194 - -
Lsi11g00331 218 Pfam Plastocyanin-like domain 36 120 IPR003245 GO:0009055
Lsi11g00331 218 Gene3D - 26 139 IPR008972 -
Lsi11g00331 218 PANTHER - 12 207 - -
Lsi11g00331 218 CDD Stellacyanin 26 126 - -
Lsi11g00331 218 PANTHER BLUE COPPER PROTEIN 12 207 IPR039391 GO:0009055
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01084 Lsi11g00331 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01333 Lsi-Chr9:21250236 Lsi11g00331 Lsi-Chr11:3428249 9.50E-27 dispersed
Lsi11g00331 Lsi-Chr11:3428249 Lsi10g00159 Lsi-Chr10:2565306 2.65E-26 dispersed
Lsi11g00333 Lsi-Chr11:3440105 Lsi11g00331 Lsi-Chr11:3428249 3.01E-24 dispersed
Lsi11g00330 Lsi-Chr11:3419945 Lsi11g00331 Lsi-Chr11:3428249 7.42E-25 tandem
Lsi11g00331 Lsi-Chr11:3428249 Lsi11g00332 Lsi-Chr11:3434757 6.04E-13 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00331 - - csv:101219397 265.003