Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00342 ATGGAGGAAAATGAAAACTGTGGCTGTTGGGCTGTCCTTAAACGCACCGTTTCAGATGTCTCCAAATCTTCCCCTTCTTCCAAACATTCCCCTAACTCCATTCCTCGCCTTACCTTACTTTACGATTCAGCTACCGAGACCCGATATTTAAACGCAAGCGACCGAGATTTATGTGCGCCGGCCGAAGCTCGGCTGTCCTTCGACAATGCTCCGCCGCCGCCGACGAGGTTGGAGGACAAATTTAAACGCCAGTTACTGAAATTTTCATTTCAGGAACTAAGATCCGCGACTGGAAATTTCCGGCCAGATAGCATTCTGGGAGAAGGAGGGTTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGGCGCCGGCCAAACCTGGATCAGGAATCACAGTCGCAGTCAAAAGCCTAAAACCTGATGGTCTTCAAGGACACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGATACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCGGAACCTGTCATATATAGAGATTTCAAAACATCAAACATATTGCTTGACACGGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCACCAGAATATCTAATGACAGGGCATTTGACATCAAAGAGTGATGTCTATAGCTTCGGCGTTGTCCTACTCGAGATCTTAACAGGGAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAGAACCTAGTGTCATGGGCTAGGCCATATTTAGATGACAAAAGGAAGCTTTACCATATAGTGGACCCTCGCTTGGAGCTTAACTACTCCATCCAAGGGGTTCAAAAAGTCTCTCGTCTCGCTTCTCACTGCATCAGTAGAGATCCGAAATCTCGTCCTACCATGGAAGAAGTTGTCAAGGTTCTCATTCCACTACAAGACTTTAACGACCTTGCCATCCTAGCATATCATTCGCGCATATCTCAGCAAGGACGCCGAAAGAAGAAATCAGATGGACTGCATCAGTTAACGTACACTCAGTCAAGAAATATTAGAACCTCTCCTTTGAATGTTGGAGTTCATCGTCGGCGATAA 1305 45.59 MEENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLTLLYDSATETRYLNASDRDLCAPAEARLSFDNAPPPPTRLEDKFKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASHCISRDPKSRPTMEEVVKVLIPLQDFNDLAILAYHSRISQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGVHRRR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3563474 3571101 - Lsi11G003420.1 Lsi11g00342 673509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00342 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Lsi11g00342 434 CDD STKc_IRAK 106 382 - -
Lsi11g00342 434 Gene3D Transferase(Phosphotransferase) domain 1 186 394 - -
Lsi11g00342 434 PANTHER OS01G0588500 PROTEIN-RELATED 78 402 - -
Lsi11g00342 434 Gene3D Phosphorylase Kinase; domain 1 73 185 - -
Lsi11g00342 434 ProSiteProfiles Protein kinase domain profile. 100 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00342 434 Pfam Protein tyrosine and serine/threonine kinase 104 379 IPR001245 GO:0004672|GO:0006468
Lsi11g00342 434 PANTHER OS01G0588500 PROTEIN 78 402 - -
Lsi11g00342 434 SUPERFAMILY Protein kinase-like (PK-like) 83 382 IPR011009 -
Lsi11g00342 434 ProSitePatterns Protein kinases ATP-binding region signature. 106 138 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00996 Lsi11g00342 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02278 Lsi-Chr3:33676943 Lsi11g00342 Lsi-Chr11:3563474 3.16E-64 dispersed
Lsi10g01383 Lsi-Chr10:17946063 Lsi11g00342 Lsi-Chr11:3563474 7.59E-153 dispersed
Lsi11g00342 Lsi-Chr11:3563474 Lsi06g00996 Lsi-Chr6:19976771 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84019 PF07714 PK_Tyr_Ser-Thr 5.70E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00342 - - csv:101217498 831.247