Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00348 ATGAAACCTGCCGATTCCACCAATGGCGATGAAGAATCCATTATTACTCCCTTGCTTGCTCAGAAATCAATTGCCAATTCTTCCTCACAGGTTGCTATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGATTACGAGATTTTTGATAATGAGTTCTTCATACAAGATTGGAGGAGTCGTGAGGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATCGGTTTGATTATGGGTCTTGTTGGATTTTTCAACAACCTGGCAGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCACCTGGAATATTATCGCCCCGGACGCTGTTAGTGAAGATTGTTGGCAGCATTTCTATTGTGTCATCATCTATGATCGTCGGAAAAGCTGGGCCTATGGTACATACAGGAGCATGTGTTGCATCCTTGGTAGGTCAGGGAGGTTTCAAAATATTTGGCTTGACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCCGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCTTGGAAAGGCATTATTTACAAAATTTTACTGGCTTGCTCGGTCTCAATTTTCACATCCTTACTTCTTTTTGGATTACCATGGTTCGCATCATGCCAACCTTGCCCATCAAGTTCTCGAGAAACTTGTCCTACGATAGGTCGATCTGGAAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGACACAGACTCCGAGTTCCAGTTATCATCAATGCTCACATTTGTCGTTACCTGTTTTTCCTTGAGTATTCTCAGTTATGGGACAGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCGGTCCATACACAAACCTCAGCCATGGCTTCTTTGCCATATTAGGCGCTGCTTCATTTCTCGGGGGGTCAATGAGGACAACAGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGCTGTTGCCTTTAATAATGTTGGTTCTCCTTATCTCCAAGACTGTAGCTGATGCTTTCAACAGTAATATTTATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTCACTGTTGCTGATGTGTTAACGAGTCCGCTTCAATTATTGCATGGCATTGAGAAGGTTCGTAACATAGTAAACATTCTCAGAATGACGAGCCATCACGGATTTCCTGTCATTGATGAACCTCCTTTCTCCGAATTCCCTGTTTTATATGGTCTAATTCTCAGAGCCCATCTTATCATGTTGTTGAAGAAGAAAGCTTTCTTGTCCGTTCCAATACTAGGATCAGAAAGAGAGGATCTTTGTAAGCTATTCTCAGCTGATGATTTTGTAAAGATGGGTTCGGGTGACGTTGAAAGGATCGAGGATGTACAATTGACCGATGAAGAGATGGAGATGTTCATCGATTTACATCCGTTTGCAAATACTTCACCTTGTACCGTCTTGGAGACAATGTCGCTTGCAAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGGTTGGTGTATTGACTCGACACGACTTCATGCCAGATTACATTCTTGGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGAAGCCACATAGAAATGGTGAAGAGGTTCAAGGTGTGGAGTTACAGAGAAGGAGAACAGCCTCTGGTCCATGACGGTCCATTGAATAGCATATATGCCATTGAAGGCCAATTTATAGATGAGTTAGATTGCAGCAAGAGCCCCTTTAGAGCCAGCCATCCTGATCAAGCTCATGTATTTCTTCTTCCTTTGAGCATCACCAACATCATTCATTTCGTTTACAGGCCAATCACTTCTCCCACTGACTACAGCCGTGATCGGATGCACCGTGTGACAACTGATTATATTCAAGTTGTTGCCAACAGGTATCCATATTGGAACCGAAGCAATGGTGCCGATCATTTTATGGTTTCATGCCATGATTGGGCACCAGAAATCTCAGATGCCAACCCCCAGCTGTTCAAAAACTTCATCAGGGTAGTATGCAATGCAAACGTCACAGAAGGCTTCCGTCCCAACATAGACATTCCACTCCCAGAAATCACCATCCACCCTGGAACGTTAGGGCCACCAGACTTAGGCCAGCCACCAGAAAACCGCCCAATTCTAGCTTTCTTCGCAGGAGGAGCTCATGGATACATCAGGAAGATCTTGATCCAACATTGGAAGGAAAAGGACAAAGAAGTTCAAGTTCATGAATATCTTCCTAAGAACCAAAATTACACCAAATTGATTGGAGAAAGCAAGTTTTGTCTCTGCCCTAGTGGCTTTGAAGTGGCAAGCCCGAGGGTGGTGGAAGCCATCTATGGTGGTTGTGTTCCAGTTATCATTTCTGATAATTATTCATTACCATTCAGCGATGTTCTAGATTGGAGTCGGTTTTCAGTGCAGATACCTGTTCAAAGAATACCAGAAATAAAAACAATTTTGAACGCTGTCTCAGAAGAGAAGTATTTGAAGATGTACAAAGGAGTGATCAAAGTAAGAAGGCATTTCAAGATAAATAGGCCTGCCAAGCCATTTGATGTAATTCATATGGTGCTTCATTCACTGTGGCTTAGGAGGCTTAACTTTGGCCTTCTGCATTGA 3039 43.21 MKPADSTNGDEESIITPLLAQKSIANSSSQVAIVGANVCPIESLDYEIFDNEFFIQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWKGIIYKILLACSVSIFTSLLLFGLPWFASCQPCPSSSRETCPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKDTDSEFQLSSMLTFVVTCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVRNIVNILRMTSHHGFPVIDEPPFSEFPVLYGLILRAHLIMLLKKKAFLSVPILGSEREDLCKLFSADDFVKMGSGDVERIEDVQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRSPVVGVLTRHDFMPDYILGLHPLLEKSRWKRSHIEMVKRFKVWSYREGEQPLVHDGPLNSIYAIEGQFIDELDCSKSPFRASHPDQAHVFLLPLSITNIIHFVYRPITSPTDYSRDRMHRVTTDYIQVVANRYPYWNRSNGADHFMVSCHDWAPEISDANPQLFKNFIRVVCNANVTEGFRPNIDIPLPEITIHPGTLGPPDLGQPPENRPILAFFAGGAHGYIRKILIQHWKEKDKEVQVHEYLPKNQNYTKLIGESKFCLCPSGFEVASPRVVEAIYGGCVPVIISDNYSLPFSDVLDWSRFSVQIPVQRIPEIKTILNAVSEEKYLKMYKGVIKVRRHFKINRPAKPFDVIHMVLHSLWLRRLNFGLLH 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3654966 3665512 - Lsi11G003480.1 Lsi11g00348 673515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00348 1012 CDD CBS_pair_voltage-gated_CLC_euk_bac 485 655 - -
Lsi11g00348 1012 Pfam CBS domain 605 652 IPR000644 -
Lsi11g00348 1012 SMART cbs_1 606 659 IPR000644 -
Lsi11g00348 1012 SMART cbs_1 493 546 IPR000644 -
Lsi11g00348 1012 Gene3D Clc chloride channel 65 314 - -
Lsi11g00348 1012 Gene3D Clc chloride channel 321 473 - -
Lsi11g00348 1012 PANTHER CHLORIDE CHANNEL PROTEIN 262 679 - -
Lsi11g00348 1012 PANTHER CHLORIDE CHANNEL PROTEIN 11 261 - -
Lsi11g00348 1012 Pfam Voltage gated chloride channel 267 454 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi11g00348 1012 Pfam Voltage gated chloride channel 130 286 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi11g00348 1012 Gene3D - 474 654 IPR046342 -
Lsi11g00348 1012 Pfam Exostosin family 692 962 IPR040911 -
Lsi11g00348 1012 ProSiteProfiles CBS domain profile. 603 663 IPR000644 -
Lsi11g00348 1012 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi11g00348 1012 PRINTS Chloride channel signature 460 474 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi11g00348 1012 PRINTS Chloride channel signature 422 441 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi11g00348 1012 PRINTS Chloride channel signature 404 420 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi11g00348 1012 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi11g00348 1012 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 261 - -
Lsi11g00348 1012 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 262 679 - -
Lsi11g00348 1012 SUPERFAMILY CBS-domain pair 476 653 IPR046342 -
Lsi11g00348 1012 SUPERFAMILY Clc chloride channel 51 475 IPR014743 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01216 Lsi-Chr8:20662295 Lsi11g00348 Lsi-Chr11:3654966 2.11E-110 dispersed
Lsi03g00391 Lsi-Chr3:4533518 Lsi11g00348 Lsi-Chr11:3654966 6.25E-21 transposed
Lsi03g00392 Lsi-Chr3:4536068 Lsi11g00348 Lsi-Chr11:3654966 1.33E-41 transposed
Lsi05g00719 Lsi-Chr5:9778960 Lsi11g00348 Lsi-Chr11:3654966 5.15E-88 transposed
Lsi09g01334 Lsi-Chr9:21265832 Lsi11g00348 Lsi-Chr11:3654966 3.40E-38 transposed
Lsi11g00348 Lsi-Chr11:3654966 Lsi06g01010 Lsi-Chr6:20196167 5.21E-174 wgd
Lsi11g00348 Lsi-Chr11:3654966 Lsi07g00393 Lsi-Chr7:4200295 2.39E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00348 K05016 - csv:101216071 754.592