Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00368 ATGACTGTGGAGGTTGGAAGAGCTAATTTGTTGGGTGAAAATGAGGATATGGATCAGTTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGATCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAAGCACTTAAAATGTTGAGGGAGAACAAAAGCAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCGCATAGCAATACCGAGCTTGTAAAGAAGGGAGTTATTCACGGTGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAACCTTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATAACACAAGTCAAAGTGTTGAAGTTGCAAGAGGTTTTCCACCTGCGGTCAGTGCTGATAATGAGAAACCTGGTAAAAGGCAGAAAGACCAAGATGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGACGACTCCTCCACCCAAAAAAAGCCAAGGGTAAATTGGTATGATGGAGACGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAAAAGATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCTAGCCATCTTCAGGCATTGATCTTTTTCATGCCTTTTGTCAAATACAGACAATACCTTAAAAAACTCTGTAGTGAGGAAGCTCAGCAATGTAACGTGATGGGTGCATTTGGAGGTAAACACACCTCCTTCAGGCCCATGGCTTCATTTAATGGATTTTCAATGACTGGAACTGGAAGGCACTCGAATGCTACATTCTCGCCGTATCCCTCTCGAGAAATAGTTGGTCAATTAAACTCTACTGCTGGATTGAGCTTACAGGGAATTGCTTCCTCTGGAATGATCCAGTCCCATAAATTGAGTAGCTCATTAAATATCGTTGGGAAACCCCATCCAGCTTTCTTGCTTGCAAACCAACCTCCGTGCACATTCAATGGTATTTCAACGTCATTGGATCACATTCAGTTGCATCGAGACAAACACACTCCGTCATTTAAAGAGTCTAATTCAATAACTGATGCCTCGAGTTTTACAGTATCCACCAGCTTCCCTGATGCTAGAGTGGCTGTTGGTAGCTCAAGCAATTATGAATTTGGAATTTCGAGCCATTCGTTGATGTTACGAGGACATAAGCAACAAATTCATGGCGGTGGAGAATTTGGAGGTCAGTCCTCTCTTAAGGTTACTGTAGACAACCCAGAACCGTTAGACAGCAGCACAGGTGTTCCTAATATTTTGGGCCATGGTCTGTCTAACAAAAACTGGCCGGGTTCAATCCAGCTGCCCAAGTTTTCATCTAATGTATCAATCACTGGAATTTACCCTCCTGATGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCCGATAACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTACGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGAAGCAGCTAAACAGGATTACTATGGCAACCATAGTTCCATTGTGAGAGACTCTCTAGTTTCTGGGATTAGTGTTGCAGATCCCTTGAATCAGATTGCAAATCAGAACAATGCAATCTGTCTAGAAAACATCGGCAGCTCTTCGACTAACCAATTGAATAATGGTGCTCCAACCTTCATTCACGATGGTGCGGAAATATCTGCGATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCAAACAAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTGTGTCAAAACAGGATCAAGATCAATCTATTCAAATAAATGATGAATTTGGATTTGACGCTCAATCTCTCGGGTCATCGTGTATATGA 2127 41.61 MTVEVGRANLLGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKSRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNNTSQSVEVARGFPPAVSADNEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQALIFFMPFVKYRQYLKKLCSEEAQQCNVMGAFGGKHTSFRPMASFNGFSMTGTGRHSNATFSPYPSREIVGQLNSTAGLSLQGIASSGMIQSHKLSSSLNIVGKPHPAFLLANQPPCTFNGISTSLDHIQLHRDKHTPSFKESNSITDASSFTVSTSFPDARVAVGSSSNYEFGISSHSLMLRGHKQQIHGGGEFGGQSSLKVTVDNPEPLDSSTGVPNILGHGLSNKNWPGSIQLPKFSSNVSITGIYPPDGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTQCYEELIGSVVEAMNGRSKQQWEAAKQDYYGNHSSIVRDSLVSGISVADPLNQIANQNNAICLENIGSSSTNQLNNGAPTFIHDGAEISAMDTWMNYDGKILMDQTKLQSGFANSSFNSLDELVNAVSKQDQDQSIQINDEFGFDAQSLGSSCI 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3798647 3803209 - Lsi11G003680.1 Lsi11g00368 673535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00368 708 SMART REC_2 24 136 IPR001789 GO:0000160
Lsi11g00368 708 SUPERFAMILY CheY-like 23 150 IPR011006 -
Lsi11g00368 708 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lsi11g00368 708 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Lsi11g00368 708 Gene3D - 206 281 - -
Lsi11g00368 708 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 688 IPR045279 GO:0009736
Lsi11g00368 708 MobiDBLite consensus disorder prediction 141 215 - -
Lsi11g00368 708 PIRSF RR_ARR_type-B 6 708 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi11g00368 708 SUPERFAMILY Homeodomain-like 208 264 IPR009057 -
Lsi11g00368 708 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 688 - -
Lsi11g00368 708 CDD REC_typeB_ARR-like 26 140 - -
Lsi11g00368 708 Gene3D - 24 187 - -
Lsi11g00368 708 MobiDBLite consensus disorder prediction 149 165 - -
Lsi11g00368 708 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02085 Lsi-Chr4:28044292 Lsi11g00368 Lsi-Chr11:3798647 9.45E-137 dispersed
Lsi05g01569 Lsi-Chr5:23459437 Lsi11g00368 Lsi-Chr11:3798647 3.52E-86 dispersed
Lsi09g01466 Lsi-Chr9:22652653 Lsi11g00368 Lsi-Chr11:3798647 4.74E-91 dispersed
Lsi09g01871 Lsi-Chr9:27519687 Lsi11g00368 Lsi-Chr11:3798647 3.82E-46 dispersed
Lsi06g01134 Lsi-Chr6:21595171 Lsi11g00368 Lsi-Chr11:3798647 1.56E-59 transposed
Lsi11g00368 Lsi-Chr11:3798647 Lsi06g01039 Lsi-Chr6:20575480 1.04E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26146 PF00072 Response_reg 1.80E-25 CL0304 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00368 K14491 - csv:101203718 1214.91