Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00377 ATGGCTGATATTTCATTGGAAGATGTTAGATGTGAGAATGTTGACCTGGAGAGGATTCCAATTGAAGAGGTATTTGAGCAACTGAAATGCAATAGAAATGGTTTGTCATCTGAGGAAGGAGAAAAAAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAAAGAGAGCAAATTCCTCAAGTTTTTGGGCTTCATGTGGAATCCCCTCTCATGGGTCATGGAATGTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATAGTGGTGTTGCTCATTATCAACTCCACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCTGCTGCTGCTCTAATGGCAGGGCTTGCTCCCAAAACCAAGGCAAGAGCAGGGATCACTGAAGTACATTTCTTACCTTTCAATCCTGTTGAGAAGCGCACTGCTATCACTTACATTGATAGTAATGGAAACTGGCATAGAAGTAGCAAGGGTGCTCCTGAACAGATCATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGAGCGCGGTCTTCGTTCTCTAGCCGTTTCTCGCCAGACTGTTTTAGAGAAGACTAAAGAAAGTGTTGGAGAGCCATGGGACTTTGTGGGCTTATTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCGAGCACTCGAACTTGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAAACCGGTCGCAGGCTTGGCATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTAGATGAACTTATTGAGAAGGCAGATGGATTTGCTGGTGTATTCCCTGAACACAAGTATGAGATAGTGAAAAAGCTTCAAGAGAGGAAGCACATTTGTGGGATGACTGGTGACGGTGTCAACGATGCCCCTGCACTCAAGAAGGCCGATATCGGAATTGCTGTAGCTGATGCAACAGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACGGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAAGTAGAGCCATCTTTCAAAGGATGAAGAACTACACAATCTATGCGGTTTCCATCACAATTCGAATCGTGTTGGGTTTCTTGCTTGTAGCTCTAATCTGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATCATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGAGTGAAGCCATCTCCTATGCCTGATTCATGGAAGCTAAACGAAATTTTCGCCACCGGTGTTGTTCTCGGAACGTACATGGCTATCATGACTGTGGTCTTCTTCTGGCTAACATATCAGACTGATTTCTTTCCAAAAACATTTGGGGTGAAGCAAATCAGTGAAAATCTATCTGAGCTTAACTCTGCTCTTTACCTCCAAGTGAGCATCATTAGCCAAGCCCTCATCTTCGTGACACGATCGAGGAGTTGGTCCTTTGTAGAACGCCCTGGTCTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTGTTGGCAACCGTCATCGCTGTGTATGCCGAATGGGACTTTGCTAGAATTCATGGCATTGGTTGGGGATGGGCAGGAGTGATTTGGATTTACAGCATCATCACATACTTCCCCCTTGATGTGCTAAAGTTCATCATCCGCTATGCATTGAGTGGGAAGGCCTGGGATAATATGCTTCAAAACAAGACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGGCACAATGGGCATCAGCACAACGTACACTTCACGGCTTACAGAAACCAAAAGCGCTATTTAACGACACGAGTAGCTACCGAGAGCTTTCCGAGATTGCAGAACAAGCAAAGAGAAGAGCTGAAGTTGCCAGGTAA 1995 44.51 MADISLEDVRCENVDLERIPIEEVFEQLKCNRNGLSSEEGEKRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKARAGITEVHFLPFNPVEKRTAITYIDSNGNWHRSSKGAPEQIIDLCDLKGEIRKKAHDIISNYAERGLRSLAVSRQTVLEKTKESVGEPWDFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLNEIFATGVVLGTYMAIMTVVFFWLTYQTDFFPKTFGVKQISENLSELNSALYLQVSIISQALIFVTRSRSWSFVERPGLLLVGAFLIAQLLATVIAVYAEWDFARIHGIGWGWAGVIWIYSIITYFPLDVLKFIIRYALSGKAWDNMLQNKTAFTTKKDYGKGEREAQWASAQRTLHGLQKPKALFNDTSSYRELSEIAEQAKRRAEVAR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3879425 3884592 + Lsi11G003770.1 Lsi11g00377 673544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00377 664 SUPERFAMILY HAD-like 227 380 IPR036412 -
Lsi11g00377 664 Gene3D - 644 664 - -
Lsi11g00377 664 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 108 240 IPR023299 GO:0000166
Lsi11g00377 664 Gene3D - 94 131 - -
Lsi11g00377 664 Gene3D - 372 561 - -
Lsi11g00377 664 Pfam haloacid dehalogenase-like hydrolase 168 348 - -
Lsi11g00377 664 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 309 421 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00377 664 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Lsi11g00377 664 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 593 IPR023298 -
Lsi11g00377 664 Gene3D - 235 371 IPR023214 -
Lsi11g00377 664 PRINTS P-type cation-transporting ATPase superfamily signature 334 353 - -
Lsi11g00377 664 PRINTS P-type cation-transporting ATPase superfamily signature 357 369 - -
Lsi11g00377 664 PRINTS P-type cation-transporting ATPase superfamily signature 251 261 - -
Lsi11g00377 664 PRINTS P-type cation-transporting ATPase superfamily signature 229 240 - -
Lsi11g00377 664 PANTHER PLASMA MEMBRANE ATPASE 135 664 - -
Lsi11g00377 664 PANTHER PLASMA MEMBRANE ATPASE 1 135 - -
Lsi11g00377 664 PANTHER CALCIUM-TRANSPORTING ATPASE 135 664 - -
Lsi11g00377 664 PANTHER CALCIUM-TRANSPORTING ATPASE 1 135 - -
Lsi11g00377 664 Coils Coil 646 664 - -
Lsi11g00377 664 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Lsi11g00377 664 Gene3D - 135 234 IPR023299 GO:0000166
Lsi11g00377 664 PRINTS H+-transporting ATPase (proton pump) signature 506 527 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00377 664 PRINTS H+-transporting ATPase (proton pump) signature 365 390 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00377 664 PRINTS H+-transporting ATPase (proton pump) signature 334 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00377 664 PRINTS H+-transporting ATPase (proton pump) signature 306 322 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00377 664 PRINTS H+-transporting ATPase (proton pump) signature 191 209 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01189 Lsi11g00377 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01132 Lsi-Chr8:19941870 Lsi11g00377 Lsi-Chr11:3879425 0 dispersed
Lsi11g00377 Lsi-Chr11:3879425 Lsi11g00770 Lsi-Chr11:8790027 0 dispersed
Lsi07g00437 Lsi-Chr7:4655089 Lsi11g00377 Lsi-Chr11:3879425 0 transposed
Lsi11g00377 Lsi-Chr11:3879425 Lsi06g01045 Lsi-Chr6:20654344 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00377 K01535 - csv:101211582 994.186