Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00378 ATGCAATTTATAGAAACAAGAACTTGTTTCTTTTCTGGGTTTCTCTTTTCCCCAGTTCAAATGGGGGTTTTAAGATGCTTGTGCTTCAATCTTCTTGTGTTTTTGTTGCTTTGTGTAGCGGCTTCTTCTACTGATCGTTACTCCGAAGCACTTTTAAGCTTGAAATCTGAATTTGTTGATGATTTTGGGAGTTTGAGTGATTGGATTGTGGGTTCTGGAGAAAACCCATTTGGGAAAATCCATGGATGTTCTTGGTCAGGGATCAAATGCGACAAGAATTCCACCATTGTTATTGGAATTGACCTGTCGATGAAGAAGCTTGATGGGGCGATTTCTGGTGAGCAGTTTCATGTTTTTAAAGAACTTGTTGATCTTAACTTGAGTCACAATTATTTGTCTGGGAAGCTTCCTGTTGGAATCTTCAATCTCAGTAATCTAAGAAGTTTGGATATCAGTAGGAATAATTTTTCTGGTCATTTTCCTCTTGGGATTTCTGGTCTTCAAAACTTGGTTATTCTTGATGCTTTTAGCAATAGTTTTTCTGGGTCATTGCCTGTTGATCTTCCCGAGCTTGAAAATCTGAAGTTTCTCAACTTTGCTGGGAGCTACTTCAAAGGGCCAATCCCTTCAGAATATGGTTCTTTCAAAAAACTTGAGTTCATTCATCTTGCAGGAAATTTTCTTAGTGGAAACTTACCTCCTGAATTGGGCAAACTCAAAACTGTGACTCATATGGAGATTGGCTACAATAGTTTCCAGGGAAATCTCCCATGGGAATTAGGCAATATGAGTAACCTTCAATATCTTGATATTGCAAGTGGAAATCTCTCTGGTTCAATTCCTAAAGAACTTGGTAATCTCACAAAGCTTGAGTCTCTTTTCCTTTTCAGAAACCAGCTATCTGGGTTCTTGCCCAAGGAACTAAGCAAAATCACTTCTCTTGTTAATTTAGATCTCTCTGATAATCATATTTCTGGTCCTATTCCAGAAAGCTTTTCAGAGTTGAAAAATCTTAGATTGCTCAGTGTTATGTACAATGAAATGACTGGTTCTGTTCCAAAAGGCATTGGAGAGCTTCCTTCATTGGAGACTCTTCTTATATGGAGCAATCAGTTCTCTGGATCACTCCCAAACAACTTGGGCAGCAACAAAAAACTTAAATGGGTTGATGTTTCCACAAACAATTTTGTTGGTGTCATCCCACCAAATATCTGCCAAGGAGATTTACTTTTTAAGTTGATCCTGTTTTCAAATCAGTTTAGTGGTGGACTTTCCCCATCCCTCTCTAATTGTTCTTCCCTTGTTCGATTGCGGCTAGAGGATAATATGTTTTCAGGTGATATTGCTCTGAAATTTAGTGATCTTCCTGATATCTCATACATAGATCTCTCTAGAAACAATTTTAGTGGAGGATTTCCTTTGGATATAAGTAAAGCTTCCAACCTTCAATACTTGAATATCTCTCATAACCCACAACTAGGAGGTGTTTTTCCTGCAGAAACATGGACTTTACCCTTTCTTCAAAACTTTTCAGCTTCTGATTGTGGTATAAGAGGAAACCTTCCCAAGTTTCAGCTCTGCAAATCCATTTCTACTATTGAATTGAATAATAACAAACTATCAGGAAAAGTCCCAGAAAGCATTGCAAGTTGCCAGGCTCTTGTAAGGATGGATTTGTCTTACAACAATCTCTCTGGTCATATACCTGAAGAACTTGCACATCTTCCTTCTATTAGCATCCTTGATCTATCTCACAACGGTTTCAATGGGTCGATACCTGATAAGTTCAGGGATTCGTCGAGCTTGCTTCTACTAAATGTGTCTTCCAATGATATCTCTGGTTCCATCCCAGAAAAAGAAGCGTTTCGATCAATGGGCAGCAGTGCATTTGCTGGAAATCCAAAGCTATGTGGAGCACCTCTGAGGTCATGTTCAGGTTCATTGGCAATGCTTGGAGGCAAAGGGATGGGGAAGCTTATACTCATCCTGATACTGTGTGCAGGTCTTGCTATAATCACGACGATATCAATTGTGTGGATTTTCTTCGTCCGAAGAGGTAGCAAAGGTAAATGGAAGATGGTGTCATTCACTGGACTTCCTCCATTCACAGCTAATGATATTCTCAGGAGTTTCGACTCTACGGAATCTAAGGAAGCGATATTGCCATTGTCTGCTTCGATTTTCAAAGCAGTTCTGCCGACTGGAATCACGGTGTCAATAAAGAAGATAGATTGGGAAGCAAAAAGAATGAAGACGATATCGGAGTTTATAACTCAATTAGGTGGTTTGAGGCACAAGAATTTGGTCAGATTGCTGGGATTCTGCCACAACAAACAGATGGTTTATCTTCTTTATGATTACTTGCCCAATGGAAATCTAGCAGAGAAAATTTCAATGAAAAGGGAATGGCCAATTAAACTCAAACTCATTATAGGTATAGCAAGGGGAATACACTTTCTTCACCATGACTGTTATCCTGCAATTCCCCATGGAGACTTGAAGCCAAGTAACATCATTTTCGACGAAAATATGGAACCCCATCTGGCTGAATTCGGACTCCGATTTCTACAACAACTAAATGAAGATCCGCTTCAATTACCGTCTACAACGAACGGAGAAGATAAATTCAATAATGCAACAGAGGAGGAGCTGTGGATGGATGTTCATAGTTTTGGGGAGATCATCCTTGAAATTATAAGCAATGGACGGTTGACGACTGCTGGATCGAGCACACAGAACAAGGCAAGAGATCTTCTGTTAAGAGAAATATACAAAGAAAATGGGATTACCTCTCCCAATTCATCACAAGAGGAAATAAAACAGGTTCTTGATCTAGCTTTGCTATGCACAAGGAGCAGGCCATCCAACAGACCATCCATGGATGATATCTTAAAGCTGTTATCAGAAATGAAACCAGAGACTTTGAAGGAGGAAGCTGTTTGTACTTTTGGTTTCAATATCATTTTTACCCCAAAAGAAGAAAGAAAAAGTATAGATTGTAAGATTGTAAAAGAAATATCAAAAGGGGAGAACGATCAAAACCACGCGCGTCGATACGCGCGTGCTCTACAAGCTCAGATAACCCATTTTCCCGCCAAGTACTTGCTTCCCGCCAAAAATACGTTCAGTCATAAGCCTTCGCCTCCATCGCTAAGCACAGAACAAAAAACCTCAAAGCTCCGAGAGAGAGAGAGAGAGAAAGAGAGAACGAAGGGTTTCAAGTGTTTCTTGAGGAAGAACCCTAATCTGCACGCAGAAATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGCGACCAAGCGCAGTCCCTTGGTGACGGAACCGGCATCGGACGAAGCGGAGATGCCGACGACAAGGCCACTCATCACTCGGTTCTTCGCAAATTCAAGGAGTTCATTCGTGGATTTGAAGCCGACAAGAATGTTTTCCCTTACAGAGAGAGCCTTCTCCACAATCCCAAGTATCTTCGCGTTGATATGGAAGACGTTAACGCTTTTGATTCCGATCTTCCGGCGAAGCTTCGATCTTCTCCTGCCGATTTCTTGCCCTTGTTTGAGACTGCTGCAGGGGAGGTTTTAATGAATCTAAAGACGAAGGTGGCTGGTGAGACTGGAGAAATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTGCTTACGTCGAAGGAGGATCCGGTCTCGATGCGGTCCCTTGGGGCACAGTACATTTCAAAACTTGTTAAAATATCTGGAATCACAATAGCTGCGTCAAGGACCAAGGCAAAGGCAACATATGTGACCTTAATTTGTAAAAACTGTAGAAGTACAACACGAGTTCCTTGTCGGCCAGGACTTGGAGGGGCAATTGTACCTCGATCATGTAATCATATTCCTCAGGCGGGAGAAGAACCATGCCCACTGGATCCCTGGATCGTGGTTCCTGACAAAAGTATGTATGTTGATCAACAGACTCTAAAACTGCAGGAAAACCCAGAGGATGTCCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGCCATCTTGTTCAAACAATTGTCCCAGGCACTAGATTGACCATCATGGGGATATACAGTATCTACCAAGCTGCCAATTCTTCTGCATCACACAAAGGAGCAGTTGCAATCAGACAGCCTTATATCAGGGTTGTAGGCATTGAAGAATGTAATGAAACTAATTCTCGGGGCCCTGCATCCTTCACAACAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCACGATGATGTGAAAAAGGCCGTGGCTTGTCTTCTTTTTGGAGGATCCAGGAAGAATTTGCCAGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCCTCTACAGCTAAATCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCGGTTGCTGTTTATACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCTTCAGTGATTCGAGATAGTAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATTCATGAAGCCATGGAACAACAGACAATATCAATTGCCAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCCGCTGCTAATCCTCCATCAGGACGTTATGATGATCTTAAGACAGCACAGGATAACATTGATTTGCAGACAACAATTCTCTCTAGATTTGATTTAATTTTCATCGTTAAAGATATAAGGATGTACAGTCAAGATAAGGTAACTATAAAGCATGCTCTTCTATTTCAACTCAAAATGCCCTTTTCCACTTTCGTGCATGGACTTGGGCTTGCCTCTTTTTGCTTGAGTTTTATTATTATAGCAAGCCACATAATAAAAGTTCACGCATCTGCTGATGCAACCTTGGGTGAAAATAGAGCTTCTAAAGAAGAGAATTGGCTAAAGAGGTATATTCAATATTGTCGAACTCAATGTTATCCCCGTTTGTCAGAATCGGCATCTATAATGCTGCAGAATAACTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAACGAAACAGGGGAGGCTGCTGCAATTCCGATTACAGTAAGGCAGCTGGAAGCTATTGTAAGATTAAGCGAGGCACTTGCAAAAATGAAGTTGTCCCATGTTGCCACTGAGGAAAATGTGCAGGAAGCTATTAGACTTTTTACTGTAGCCACGATGGACGCAGCACGCTCTGGGATTCATCAGCAAGTAAATCTGACTCCTGAAATTGCTAATGAAATAAAGGTTGGTCTAATACACAACCACAACACTGGTTTTCATTTCCTCCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATTTCTGAGAGAAGGCTGATTGACGAGCTCACCAAAATGGGGATGAACGAGTCAATTGTGAGAAGAGCTCTGATTATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAAAGGCGTAGTTCAAACATACGGGGTGATGAGATATTATTAAACCAGAAGAAGACCACAGTCATGATAGCCATGTACGTTCCGAGAACAACACCGGTGGCGAAAATTTCGTTTAGCTTCCATGAATCAGGCATAGGAGATGGCTTCACTCTATCCTTGGAGATGGTCATGATGGTTCCATCATTCAAGATGGCAATGATCAAGACCATGAAAGGTGAGAAGTCAAACTTCCAGATTAGAGCTACAAGCAAGAAACCCAACACGATTCGAATTATGGCTCTACTTGTTAGAACTGCACTCACGATTACACTGAGACCTGGTTCCGTTAAAACAATGTCTGATGCACTCCTTGCTGCATCTGTTGCATCAGCTACAGCAATTCCGATATCGGCCTTCTTGAGTGCAGGGGCATCGTTGACACCGTCACCAAAAGTTATTACCAGGGAATACACCAGCAAATCCATCTGCCTTCTCAATAAGTTCATCTACAGGAATGCTAGCAATGGATTCATCCTTGCTTTGACCAAGAGCACCCTTGCTACTTCTATGCCAGTTTCCATTACTATCAATGTAAGTGATAGCAGTGCGCTTCTCAACAGGATTGAA 6180 41.55 MQFIETRTCFFSGFLFSPVQMGVLRCLCFNLLVFLLLCVAASSTDRYSEALLSLKSEFVDDFGSLSDWIVGSGENPFGKIHGCSWSGIKCDKNSTIVIGIDLSMKKLDGAISGEQFHVFKELVDLNLSHNYLSGKLPVGIFNLSNLRSLDISRNNFSGHFPLGISGLQNLVILDAFSNSFSGSLPVDLPELENLKFLNFAGSYFKGPIPSEYGSFKKLEFIHLAGNFLSGNLPPELGKLKTVTHMEIGYNSFQGNLPWELGNMSNLQYLDIASGNLSGSIPKELGNLTKLESLFLFRNQLSGFLPKELSKITSLVNLDLSDNHISGPIPESFSELKNLRLLSVMYNEMTGSVPKGIGELPSLETLLIWSNQFSGSLPNNLGSNKKLKWVDVSTNNFVGVIPPNICQGDLLFKLILFSNQFSGGLSPSLSNCSSLVRLRLEDNMFSGDIALKFSDLPDISYIDLSRNNFSGGFPLDISKASNLQYLNISHNPQLGGVFPAETWTLPFLQNFSASDCGIRGNLPKFQLCKSISTIELNNNKLSGKVPESIASCQALVRMDLSYNNLSGHIPEELAHLPSISILDLSHNGFNGSIPDKFRDSSSLLLLNVSSNDISGSIPEKEAFRSMGSSAFAGNPKLCGAPLRSCSGSLAMLGGKGMGKLILILILCAGLAIITTISIVWIFFVRRGSKGKWKMVSFTGLPPFTANDILRSFDSTESKEAILPLSASIFKAVLPTGITVSIKKIDWEAKRMKTISEFITQLGGLRHKNLVRLLGFCHNKQMVYLLYDYLPNGNLAEKISMKREWPIKLKLIIGIARGIHFLHHDCYPAIPHGDLKPSNIIFDENMEPHLAEFGLRFLQQLNEDPLQLPSTTNGEDKFNNATEEELWMDVHSFGEIILEIISNGRLTTAGSSTQNKARDLLLREIYKENGITSPNSSQEEIKQVLDLALLCTRSRPSNRPSMDDILKLLSEMKPETLKEEAVCTFGFNIIFTPKEERKSIDCKIVKEISKGENDQNHARRYARALQAQITHFPAKYLLPAKNTFSHKPSPPSLSTEQKTSKLREREREKERTKGFKCFLRKNPNLHAEMSGWDEGGIYYSDQAQSLGDGTGIGRSGDADDKATHHSVLRKFKEFIRGFEADKNVFPYRESLLHNPKYLRVDMEDVNAFDSDLPAKLRSSPADFLPLFETAAGEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLVKISGITIAASRTKAKATYVTLICKNCRSTTRVPCRPGLGGAIVPRSCNHIPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSSASHKGAVAIRQPYIRVVGIEECNETNSRGPASFTTEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKVTIKHALLFQLKMPFSTFVHGLGLASFCLSFIIIASHIIKVHASADATLGENRASKEENWLKRYIQYCRTQCYPRLSESASIMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVATMDAARSGIHQQVNLTPEIANEIKVGLIHNHNTGFHFLQAETQIKRRIGIGNHISERRLIDELTKMGMNESIVRRALIIMHQRDEVEYKRERRSSNIRGDEILLNQKKTTVMIAMYVPRTTPVAKISFSFHESGIGDGFTLSLEMVMMVPSFKMAMIKTMKGEKSNFQIRATSKKPNTIRIMALLVRTALTITLRPGSVKTMSDALLAASVASATAIPISAFLSAGASLTPSPKVITREYTSKSICLLNKFIYRNASNGFILALTKSTLATSMPVSITINVSDSSALLNRIE 2060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3882467 3897146 - Lsi11G003780.1 Lsi11g00378 673545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00378 2060 Gene3D Transferase(Phosphotransferase) domain 1 788 983 - -
Lsi11g00378 2060 Gene3D Ribonuclease Inhibitor 44 331 IPR032675 -
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1763 1780 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1379 1391 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1687 1702 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1229 1244 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1255 1267 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1520 1534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1572 1584 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1599 1607 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1548 1561 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1460 1475 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 Gene3D - 1400 1786 IPR027417 -
Lsi11g00378 2060 Pfam Leucine rich repeat 530 587 IPR001611 GO:0005515
Lsi11g00378 2060 Pfam Leucine rich repeat 313 371 IPR001611 GO:0005515
Lsi11g00378 2060 CDD MCM5 1423 1767 - -
Lsi11g00378 2060 Gene3D - 1117 1208 - -
Lsi11g00378 2060 ProSiteProfiles MCM family domain profile. 1419 1625 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 Pfam MCM N-terminal domain 1127 1198 IPR027925 -
Lsi11g00378 2060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1429 1766 IPR027417 -
Lsi11g00378 2060 PANTHER UNNAMED PRODUCT 22 973 - -
Lsi11g00378 2060 Gene3D - 1255 1313 - -
Lsi11g00378 2060 Pfam Protein kinase domain 725 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00378 2060 Pfam MCM AAA-lid domain 1679 1767 IPR041562 -
Lsi11g00378 2060 ProSitePatterns MCM family signature. 1528 1536 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lsi11g00378 2060 SUPERFAMILY Protein kinase-like (PK-like) 725 967 IPR011009 -
Lsi11g00378 2060 SMART mcm 1224 1770 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 SMART LRR_typ_2 311 334 IPR003591 -
Lsi11g00378 2060 SMART LRR_typ_2 143 167 IPR003591 -
Lsi11g00378 2060 SMART LRR_typ_2 359 383 IPR003591 -
Lsi11g00378 2060 SMART LRR_typ_2 575 598 IPR003591 -
Lsi11g00378 2060 SMART LRR_typ_2 287 310 IPR003591 -
Lsi11g00378 2060 ProSiteProfiles Protein kinase domain profile. 691 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00378 2060 SUPERFAMILY L domain-like 330 644 - -
Lsi11g00378 2060 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Lsi11g00378 2060 SUPERFAMILY Nucleic acid-binding proteins 1128 1385 IPR012340 -
Lsi11g00378 2060 SUPERFAMILY L domain-like 79 401 - -
Lsi11g00378 2060 Gene3D Ribonuclease Inhibitor 332 649 IPR032675 -
Lsi11g00378 2060 Gene3D Phosphorylase Kinase; domain 1 711 787 - -
Lsi11g00378 2060 Pfam MCM OB domain 1228 1363 IPR033762 -
Lsi11g00378 2060 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 22 973 - -
Lsi11g00378 2060 MobiDBLite consensus disorder prediction 1039 1068 - -
Lsi11g00378 2060 Pfam Leucine rich repeat N-terminal domain 49 91 IPR013210 -
Lsi11g00378 2060 Pfam MCM P-loop domain 1406 1625 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g00378 2060 Gene3D - 1228 1363 IPR012340 -
Lsi11g00378 2060 SMART serkin_6 717 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00378 - - K02209 csv:101212061 1694.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01268 Lsi-Chr3:23425369 Lsi11g00378 Lsi-Chr11:3882467 2.00E-97 dispersed
Lsi03g02054 Lsi-Chr3:31863226 Lsi11g00378 Lsi-Chr11:3882467 1.35E-06 dispersed
Lsi07g00100 Lsi-Chr7:1134112 Lsi11g00378 Lsi-Chr11:3882467 0 dispersed
Lsi11g00378 Lsi-Chr11:3882467 Lsi01g00847 Lsi-Chr1:6791970 4.25E-156 dispersed
Lsi11g01129 Lsi-Chr11:19722511 Lsi11g00378 Lsi-Chr11:3882467 4.18E-86 dispersed
Lsi11g00378 Lsi-Chr11:3882467 Lsi05g00800 Lsi-Chr5:11817984 1.05E-159 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G14700 52.6 2.6e-76 283.9
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G14700 68.1 5.7e-55 213.0
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G12620 55.3 1.1e-82 305.1
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G12620 69.5 6.8e-56 216.1
Lsi08g01455 . 2 372 Core DNA Replication Machinery Family AT2G37560 63.6 2.3e-138 488.8
Lsi04g01057 . 6 378 Core DNA Replication Machinery Family AT2G01120 63.4 1.4e-134 476.5
Lsi09g01574 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 8.6e-175 610.5
Lsi11g00986 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.4 1.7e-94 342.8
Lsi11g01609 . 80 903 Core DNA Replication Machinery Family AT1G79150 54.4 4.0e-229 791.6
Lsi03g01268 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1352.8
Lsi01g00160 . 107 687 Core DNA Replication Machinery Family AT5G46280 78.6 4.3e-259 890.6
Lsi11g01129 . 1 931 Core DNA Replication Machinery Family AT2G16440 69.3 0.0e+00 1105.9
Lsi11g00378 . 1087 1862 Core DNA Replication Machinery Family AT2G07690 73.6 0.0e+00 1080.9
Lsi01g00004 . 7 923 Core DNA Replication Machinery Family AT5G44635 61.5 2.1e-310 1061.6
Lsi02g02475 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.0
Lsi10g01424 . 36 481 Core DNA Replication Machinery Family AT2G29680 50.6 7.8e-127 451.1
Lsi10g01424 . 37 483 Core DNA Replication Machinery Family AT1G07270 52.1 1.7e-120 429.9
Lsi02g02100 . 758 1350 Core DNA Replication Machinery Family AT3G25100 76.4 2.5e-257 884.8
Lsi03g02053 . 26 672 Core DNA Replication Machinery Family AT3G09660 66.3 2.9e-237 818.5
Lsi03g02054 . 12 181 Core DNA Replication Machinery Family AT3G09660 81.2 6.6e-72 269.2
Lsi03g00736 . 22 377 Core DNA Replication Machinery Family AT2G14050 67.4 9.9e-151 530.8
Lsi03g00738 . 16 198 Core DNA Replication Machinery Family AT2G14050 53.0 2.5e-45 180.6
Lsi10g00493 . 1890 2300 Core DNA Replication Machinery Family AT2G20980 55.5 8.0e-119 424.1
Lsi02g02726 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.3 9.5e-76 280.0
Lsi03g00967 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 4.9e-61 230.7
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Lsi05g02052 . 6 171 Core DNA Replication Machinery Family AT5G49010 57.2 1.3e-45 179.9
Lsi10g00533 . 1 1707 Core DNA Replication Machinery Family AT5G67100 52.7 0.0e+00 1597.8
Lsi02g00133 . 2 572 Core DNA Replication Machinery Family AT1G67630 53.8 5.1e-181 631.3
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi08g00158 . 10 382 Core DNA Replication Machinery Family AT5G41880 58.0 2.9e-125 445.7
Lsi08g00157 . 57 255 Core DNA Replication Machinery Family AT5G41880 60.4 1.1e-76 284.3
Lsi01g01175 . 1 968 Core DNA Replication Machinery Family AT5G63960 69.8 0.0e+00 1424.5
Lsi03g01734 . 1 550 Core DNA Replication Machinery Family AT2G42120 57.6 1.9e-177 619.0
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi10g01177 . 1 1996 Core DNA Replication Machinery Family AT1G08260 64.8 0.0e+00 2626.3
Lsi02g01714 . 8 1499 Core DNA Replication Machinery Family AT1G08260 65.4 0.0e+00 1877.4
Lsi02g01713 . 15 187 Core DNA Replication Machinery Family AT1G08260 55.6 1.1e-44 180.3
Lsi10g01177 . 25 2103 Core DNA Replication Machinery Family AT2G27120 62.0 0.0e+00 2599.7
Lsi02g01714 . 31 1499 Core DNA Replication Machinery Family AT2G27120 63.2 0.0e+00 1778.5
Lsi02g01713 . 24 187 Core DNA Replication Machinery Family AT2G27120 53.9 5.6e-41 167.9
Lsi02g00021 . 74 324 Core DNA Replication Machinery Family AT5G22110 78.1 5.8e-119 424.9
Lsi02g00022 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.2 2.6e-58 223.4
Lsi10g01127 . 71 1019 Core DNA Replication Machinery Family AT5G22010 59.9 1.9e-285 978.8
Lsi07g01383 . 54 433 Core DNA Replication Machinery Family AT1G63160 70.3 3.4e-139 491.5
Lsi01g01707 . 1 357 Core DNA Replication Machinery Family AT5G27740 79.3 1.3e-165 579.3
Lsi04g02414 . 36 285 Core DNA Replication Machinery Family AT1G21690 62.5 1.1e-97 353.6
Lsi08g00447 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.6 1.5e-156 549.3
Lsi11g00167 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-253 871.7
Lsi07g01137 . 32 704 Core DNA Replication Machinery Family AT2G06510 51.0 1.2e-198 689.9
Lsi06g01410 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 2.7e-251 864.8
Lsi07g01137 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.5 4.0e-232 801.6
Lsi06g01410 . 1 618 Core DNA Replication Machinery Family AT5G61000 67.4 2.7e-246 848.2
Lsi07g01137 . 5 799 Core DNA Replication Machinery Family AT4G19130 54.8 1.1e-228 790.0
Lsi06g00020 . 1 385 Core DNA Replication Machinery Family AT5G26680 78.8 2.2e-175 612.1
Lsi07g00045 . 42 374 Core DNA Replication Machinery Family AT2G25100 59.5 7.1e-106 380.6
Lsi10g01227 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.2 3.8e-298 1020.8
Lsi10g01227 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.6 5.9e-244 840.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011422 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84021 PF07714 PK_Tyr_Ser-Thr 4.00E-20 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00378 Lsi_Chr11 FPKM 25.754484 28.398335 2.350726 2.795483 1.202291 1.066344 1.286329 35.629681 38.5317 36.53545