Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00389 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAAGTTCTGGGGTTAATAATACCAAGCCATGGCCTATGCATTGTGAATTTTTGCAGAATCAGATGGGGAATCCTGATAAGGAGCCTGCTCTTACTGGAACTAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAGGAAAGAGAACCCATCTACTTTTGTTCCAGCTCTTAGATCAGGAGAATGGTCTGATATTGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCTGTGGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGTCATGGAGGAAAAGGTGCTGCACAGTTTGTTCGTGAACACTTGCCGAGAGTAATTGTTGAAGATTCTGATTTTCCTTTAGAGCTTGAAAAGGTGGTCACGAGGTCGTTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTATCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAATGCTGGCGACTGCCGAGCAGTACTGTCAAGACAAGGATGTGCAGTAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGTGGATTCGTTGATGATGATTATCTAAACGGCCTGCTCGGGGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAGTGGGTGAAGGAGGTGGACCGTTAAGTGCGGAACCTGAACTTAGATTAATGACATTGACAAAGGAGGACGAGTTCTTGATCATAGGTAGTGATGGAATATGGGATGTCTTCACGAGTCAAAACGCTATTGATTTTGCTCGGAGAAGGCTCCAAGAGCACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTCTTGGTTAGCTTTCACTTGGAGCCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAGAACCTCAAATTTCTTCTAGAAGGATAG 1146 44.42 MCVTDAEQVGTERPSSGVNNTKPWPMHCEFLQNQMGNPDKEPALTGTSDRTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCGFLNEEAVSFYGVFDGHGGKGAAQFVREHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFVDDDYLNGLLGVTRAIGDWHLEGMKEVGEGGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4007795 4013461 - Lsi11G003890.1 Lsi11g00389 673556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00389 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Lsi11g00389 381 SMART PP2C_4 73 346 IPR001932 -
Lsi11g00389 381 SUPERFAMILY PP2C-like 73 349 IPR036457 -
Lsi11g00389 381 MobiDBLite consensus disorder prediction 1 58 - -
Lsi11g00389 381 PANTHER PROTEIN PHOSPHATASE 2C 1 369 IPR015655 GO:0004722|GO:0006470
Lsi11g00389 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Lsi11g00389 381 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 369 - -
Lsi11g00389 381 Gene3D - 66 351 IPR036457 -
Lsi11g00389 381 CDD PP2Cc 83 348 IPR001932 -
Lsi11g00389 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01346 Lsi-Chr4:21213825 Lsi11g00389 Lsi-Chr11:4007795 1.03E-35 dispersed
Lsi04g01822 Lsi-Chr4:25398019 Lsi11g00389 Lsi-Chr11:4007795 4.02E-109 dispersed
Lsi09g01515 Lsi-Chr9:23255055 Lsi11g00389 Lsi-Chr11:4007795 1.07E-83 dispersed
Lsi11g00389 Lsi-Chr11:4007795 Lsi04g01361 Lsi-Chr4:21361522 1.32E-39 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26147 PF00481 PP2C 1.80E-67 CL0238 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00389 K14803 - csv:101210349 721.079