Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00389 | ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAAGTTCTGGGGTTAATAATACCAAGCCATGGCCTATGCATTGTGAATTTTTGCAGAATCAGATGGGGAATCCTGATAAGGAGCCTGCTCTTACTGGAACTAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAGGAAAGAGAACCCATCTACTTTTGTTCCAGCTCTTAGATCAGGAGAATGGTCTGATATTGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCTGTGGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGTCATGGAGGAAAAGGTGCTGCACAGTTTGTTCGTGAACACTTGCCGAGAGTAATTGTTGAAGATTCTGATTTTCCTTTAGAGCTTGAAAAGGTGGTCACGAGGTCGTTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTATCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAATGCTGGCGACTGCCGAGCAGTACTGTCAAGACAAGGATGTGCAGTAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGTGGATTCGTTGATGATGATTATCTAAACGGCCTGCTCGGGGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAGTGGGTGAAGGAGGTGGACCGTTAAGTGCGGAACCTGAACTTAGATTAATGACATTGACAAAGGAGGACGAGTTCTTGATCATAGGTAGTGATGGAATATGGGATGTCTTCACGAGTCAAAACGCTATTGATTTTGCTCGGAGAAGGCTCCAAGAGCACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTCTTGGTTAGCTTTCACTTGGAGCCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAGAACCTCAAATTTCTTCTAGAAGGATAG | 1146 | 44.42 | MCVTDAEQVGTERPSSGVNNTKPWPMHCEFLQNQMGNPDKEPALTGTSDRTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCGFLNEEAVSFYGVFDGHGGKGAAQFVREHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFVDDDYLNGLLGVTRAIGDWHLEGMKEVGEGGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4007795 | 4013461 | - | Lsi11G003890.1 | Lsi11g00389 | 673556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00389 | 381 | ProSitePatterns | PPM-type phosphatase domain signature. | 122 | 130 | IPR000222 | GO:0043169 | |
Lsi11g00389 | 381 | SMART | PP2C_4 | 73 | 346 | IPR001932 | - | |
Lsi11g00389 | 381 | SUPERFAMILY | PP2C-like | 73 | 349 | IPR036457 | - | |
Lsi11g00389 | 381 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Lsi11g00389 | 381 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 369 | IPR015655 | GO:0004722|GO:0006470 | |
Lsi11g00389 | 381 | ProSiteProfiles | PPM-type phosphatase domain profile. | 83 | 348 | IPR001932 | - | |
Lsi11g00389 | 381 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 1 | 369 | - | - | |
Lsi11g00389 | 381 | Gene3D | - | 66 | 351 | IPR036457 | - | |
Lsi11g00389 | 381 | CDD | PP2Cc | 83 | 348 | IPR001932 | - | |
Lsi11g00389 | 381 | Pfam | Protein phosphatase 2C | 95 | 340 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01346 | Lsi-Chr4:21213825 | Lsi11g00389 | Lsi-Chr11:4007795 | 1.03E-35 | dispersed | |
Lsi04g01822 | Lsi-Chr4:25398019 | Lsi11g00389 | Lsi-Chr11:4007795 | 4.02E-109 | dispersed | |
Lsi09g01515 | Lsi-Chr9:23255055 | Lsi11g00389 | Lsi-Chr11:4007795 | 1.07E-83 | dispersed | |
Lsi11g00389 | Lsi-Chr11:4007795 | Lsi04g01361 | Lsi-Chr4:21361522 | 1.32E-39 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26147 | PF00481 | PP2C | 1.80E-67 | CL0238 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00389 | K14803 | - | csv:101210349 | 721.079 |