Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00399 ATGGCGGGTAATGGGGTTTTTGCAGAGATCCTCGAAGGTGAAGTTTACAAATACTATTCCGAAGGTGAGTGGAAGAAATCCTCCTCCGGGAAAACCGTTGCCATTATCAACCCCACTACAAGGAAGACTCAGTACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAAACTGCTCAGAAATCATGGGCAAAGACTCCATTGTGGAAGAGAGCAGAGCTTCTTCACAAAGCTGCTTCCATTTTGAAAGAACACAAAGCTCCCATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCTAAAGATGCAGTGACTGAGGTTGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGACAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCTCTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATTTGGCTGTTTCAAAAATTGCCCCGGCTTTGATTGCTGGAAATTCAATCGTCCTCAAGCCTCCAACTCAGGGTGCTGTTTCGGCACTCCACATGGTACATTGCTTCCACCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACCGGAAAAGGTTCCGAGATCGGTGATTTCCTCACGATGCATCCGGGTGTCGACTGTATAAGTTTTACAGGTGGGGATACAGGTATTGCAATTTCAAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGAGGCAAAGATGCCTGCATTGTGCTTGAGGATGCAGACCTCGATTTAGTTGCTGCTAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTAAAGGTTGTTTTGGTAATGGAGTCCGTCGCAGATGCTTTGGTCGAGAAAGTAAAGGCACGGGTGGCTAAATTAACCGTTGGTGCCCCTGAAGACGACTCAGACATTACTCCAGTCGTGACTGAGTCGTCGGCGAATTTCATTGAAGGATTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATTTGGCCCTTGTTATTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCCGTCATTAGGATCAGTTCTATTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAAACTGGAACAGTTCAAATCAACTCTGCACCCGCTCGAGGACCCGATCATTTCCCATTTCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGTGTTACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTTATCAACTTGCCAACACCTTCCTACACCATGGGTTAG 1491 45.41 MAGNGVFAEILEGEVYKYYSEGEWKKSSSGKTVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAASILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4146165 4151838 + Lsi11G003990.1 Lsi11g00399 673566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00399 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Lsi11g00399 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Lsi11g00399 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Lsi11g00399 496 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Lsi11g00399 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Lsi11g00399 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Lsi11g00399 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Lsi11g00399 496 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Lsi11g00399 496 SUPERFAMILY ALDH-like 14 487 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00399 Lsi-Chr11:4146165 Lsi11g00444 Lsi-Chr11:4619163 1.36E-47 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00399 K00131 - csv:101208699 958.747