Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00401 ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGCCGTAACCAGCCGCCGGAGAACGACCCCTCTCAACTCCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCATATCCTCTCGACCGTCCCCCCTCCCTGGGAACTCCCCGCCGGCCTCACAAATCCTCACTCCGACCTCCCTCCCCAACCACCTCCGCCGTCTAATCCCGACAATGTCGCGTTTCAGATCAATGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGTCTCTGCCACCGCCGACGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGACGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATTCGATTGATCACGGTTCTGTCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCACAATCAATCTCAGCTCACAAATCTGCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGTACTCCATCTCCGGCGGCGCCTAGCTCCGGCGGTGGTGCTGCACCACCGGCTCAGCCCCGGCAGAGAGTCAGAGCTCGTAGAGGACAAGCCACAGATCCACATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCTCTACAAGAACTGGTTCCCAACGCTAACAAGGTCAGTTTCGTCTTTTCACTTTCAATTGGGACTTTTCCGATAAAGTATTATAATACAGACAAAGCTTCAATGTTGGATGAGATCATAGACTATGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTCTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACCGGCGGGGCCGGCGGACAGAACTCCGCCGAAGCTCCGTCCAGTAACGACGCGATGACGGTAACGGAGCATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCTGCCATGCAATACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAATCACGGCGTCGAAGGTCAGAGGAGATGCCCCCACCTCTCCCAGTCTGTCGGCGTTGACCGTTCAGTCAACCGCCTTGGGTAACGGCACCGTCGACAGAACCGTCAGAGACTCTGTGTCCGTTTCACGGCCGCCGTGA 1335 55.21 MRLTNSLPDLHSHRRNQPPENDPSQLHHHQLQTSLFHPSSFSSDDFLDHILSTVPPPWELPAGLTNPHSDLPPQPPPPSNPDNVAFQINDTTPAAKMAMALLQQQLLMSRGIVSATADDDSGLLPMPGNDVVEIEGSSSFKCPNSIDHGSVIPSLFNEFAGFLNASGSGHNHNQSQLTNLQGNSNSQKQNFGAPVSVSTPSPAAPSSGGGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVSFVFSLSIGTFPIKYYNTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQNSAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITASKVRGDAPTSPSLSALTVQSTALGNGTVDRTVRDSVSVSRPP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4157224 4161964 + Lsi11G004010.1 Lsi11g00401 673568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00401 444 MobiDBLite consensus disorder prediction 315 352 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 314 352 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 167 205 - -
Lsi11g00401 444 Pfam Helix-loop-helix DNA-binding domain 232 295 IPR011598 GO:0046983
Lsi11g00401 444 MobiDBLite consensus disorder prediction 1 28 - -
Lsi11g00401 444 PANTHER TRANSCRIPTION FACTOR BHLH69 38 404 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 167 235 - -
Lsi11g00401 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 294 IPR011598 GO:0046983
Lsi11g00401 444 MobiDBLite consensus disorder prediction 61 81 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 7 22 - -
Lsi11g00401 444 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 404 - -
Lsi11g00401 444 SMART finulus 233 300 IPR011598 GO:0046983
Lsi11g00401 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 303 IPR036638 GO:0046983
Lsi11g00401 444 Gene3D - 222 302 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00401 - - - csv:101222794 578.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01169 Lsi-Chr6:21956891 Lsi11g00401 Lsi-Chr11:4157224 4.07E-109 dispersed
Lsi08g00018 Lsi-Chr8:435166 Lsi11g00401 Lsi-Chr11:4157224 2.57E-12 dispersed
Lsi11g00401 Lsi-Chr11:4157224 Lsi08g00756 Lsi-Chr8:15904120 2.34E-22 dispersed
Lsi11g00401 Lsi-Chr11:4157224 Lsi04g01455 Lsi-Chr4:22304152 1.50E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g658 Blo01g00628 . Bda01g01945 . Bpe01g00640 Bpe02g02124 . . Cmo10g00511 Cmo11g00470 Cma05g01236 Cma12g01153 . Car12g01123 Sed08g1570 . . Bhi02g00893 Tan09g1547 Cmetu05g1643 . Hepe09g0590 . . . . . . . . . . . . Cone7ag0587 . Csa02g00267 . Cme02g01076 . . . . . . Bma01g00324 . . Cmo05g01263 Cmo12g01174 Cma10g00480 Cma11g00473 Car10g00442 . Cpe11g01019 Cpe07g01154 Bhi06g01808 . . . . . . Cla06g01221 Cam06g1362 Cec06g1407 Cco06g1413 Clacu06g1311 Cmu06g1282 Cre06g2093 Lsi11g00401 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01719 . 46 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 59.4 3.0e-40 162.5
Lsi05g00630 . 63 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 79.0 2.0e-53 206.1
Lsi10g00160 . 4 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.7 5.3e-46 181.4
Lsi02g00656 . 51 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.2 8.2e-39 157.5
Lsi03g01333 . 2 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 51.5 9.2e-52 200.7
Lsi04g01698 CCT,ECH 25 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 55.9 5.6e-44 175.6
Lsi05g00449 . 42 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.8 8.1e-118 421.0
Lsi02g00527 . 51 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.4 4.8e-102 368.6
Lsi10g00463 . 40 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.8 7.4e-51 198.0
Lsi01g00601 . 80 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 58.2 8.5e-47 184.5
Lsi05g02130 . 14 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.7 5.1e-154 541.6
Lsi02g00525 CCT 161 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 66.7 1.6e-41 166.8
Lsi09g01503 . 38 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 60.6 8.4e-44 174.1
Lsi05g01413 . 41 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 55.4 1.8e-38 156.4
Lsi09g01503 . 36 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 58.0 5.6e-45 177.9
Lsi05g01413 . 39 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 50.6 1.5e-37 153.3
Lsi07g00339 . 6 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 59.2 2.9e-43 171.8
Lsi07g00339 . 4 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 67.4 2.6e-41 165.2
Lsi07g01119 . 374 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.6 1.1e-61 235.0
Lsi01g00968 . 124 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 58.8 2.6e-42 169.9
Lsi03g00644 . 163 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.1 6.3e-45 178.3
Lsi05g00991 . 1 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 50.8 2.2e-131 466.1
Lsi04g00293 . 58 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.0 5.0e-75 278.5
Lsi09g01016 . 16 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.3 9.8e-71 264.2
Lsi06g01209 . 26 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.4 5.6e-53 204.5
Lsi04g01550 CCT,ECH 16 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.1 1.4e-46 183.3
Lsi10g00560 . 44 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.3 1.2e-42 170.2
Lsi08g01480 CCT,ECH 105 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 81.1 2.0e-37 152.9
Lsi01g01144 . 22 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 56.9 6.5e-37 151.0
Lsi01g01144 . 78 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.7 2.6e-42 169.1
Lsi05g01454 . 1 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.6 3.1e-50 195.3
Lsi04g01455 CCT 206 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 53.3 7.2e-45 178.7
Lsi07g01198 . 66 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 53.3 1.0e-146 517.3
Lsi04g01492 CCT,ECH 243 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 81.9 1.3e-37 153.7
Lsi11g01112 . 188 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36540 77.6 8.1e-39 157.9
Lsi02g02245 . 74 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.4 8.6e-95 343.6
Lsi06g00191 . 96 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 65.3 1.0e-63 240.4
Lsi06g01169 . 159 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 55.9 1.4e-44 176.8
Lsi11g00401 . 214 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 56.3 1.8e-39 159.8
Lsi07g01198 . 1 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.9 1.4e-165 580.1
Lsi01g00831 . 141 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 59.4 5.1e-60 228.4
Lsi08g01047 CCT 164 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.2 1.8e-52 203.4
Lsi04g02300 CCT 159 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 57.6 6.5e-47 184.9
Lsi11g01112 . 194 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 85.3 1.4e-39 161.0
Lsi09g00778 . 334 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 82.5 1.2e-38 157.9
Lsi04g00328 . 361 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 80.4 1.0e-37 154.8
Lsi11g01112 . 181 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 52.2 1.6e-43 173.7
Lsi05g01353 . 263 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.2 4.0e-39 159.1
Lsi09g00778 . 335 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 78.5 1.4e-36 150.6
Lsi04g00328 . 362 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 70.3 1.4e-36 150.6
Lsi11g01112 . 175 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G18300 79.1 2.6e-39 159.8
Lsi06g01169 . 203 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 64.7 5.4e-65 244.6
Lsi11g00401 . 212 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 59.0 1.5e-59 226.5
Lsi06g00191 . 137 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.3 2.1e-45 179.5
Lsi02g02245 . 139 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.1 4.5e-43 171.8
Lsi06g01169 . 205 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 60.8 2.7e-57 219.5
Lsi11g00401 . 218 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.3 4.0e-53 205.7
Lsi02g02245 . 150 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.1 1.1e-42 171.0
Lsi06g00191 . 148 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 63.7 1.9e-42 170.2
Lsi02g02245 . 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 62.2 1.3e-90 330.1
Lsi06g00191 . 129 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 64.5 1.7e-58 223.4
Lsi06g01169 . 201 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 57.5 7.8e-43 171.4
Lsi04g00328 . 352 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 61.6 3.9e-43 172.6
Lsi09g00778 . 325 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 77.6 6.2e-41 165.2
Lsi08g01550 CCT 193 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 57.7 8.3e-38 154.8
Lsi05g01353 . 333 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G26260 62.3 6.2e-39 158.7
Lsi02g02133 . 285 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 52.3 5.1e-43 172.2
Lsi09g00778 . 325 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 53.8 5.3e-40 162.2
Lsi11g01112 . 181 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 65.0 1.0e-38 157.9
Lsi04g01455 CCT 214 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 55.9 2.5e-37 153.3
Lsi04g00328 . 355 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 50.6 1.2e-36 151.0
Lsi11g01112 . 183 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 75.7 6.2e-38 155.6
Lsi04g00328 . 355 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 76.5 2.4e-37 153.7
Lsi09g00778 . 307 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 65.9 6.9e-37 152.1
Lsi06g01503 . 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.5 4.4e-55 211.8
Lsi08g00018 . 15 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 56.3 2.9e-52 202.2
Lsi08g00018 . 15 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 56.4 1.5e-49 193.4
Lsi06g01169 . 169 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 65.4 9.1e-59 224.2
Lsi11g00401 . 212 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 63.4 7.0e-51 198.0
Lsi06g00191 . 135 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 59.2 2.2e-44 176.4
Lsi02g02245 . 132 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 53.5 9.1e-43 171.0
Lsi03g00573 CCT,ECH 237 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.2 5.6e-39 158.7
Lsi04g01492 CCT,ECH 245 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.0 2.8e-38 156.4
Lsi08g01523 CCT,ECH 242 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 88.4 1.8e-37 153.7
Lsi02g02960 . 197 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.7 1.1e-64 244.2
Lsi04g01550 CCT,ECH 21 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 60.0 4.4e-45 178.3
Lsi10g00560 . 68 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 87.4 8.6e-41 164.1
Lsi08g01480 CCT,ECH 108 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 85.9 6.8e-38 154.5
Lsi08g00990 . 2 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.9 2.8e-55 212.6
Lsi05g01835 . 64 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 62.0 1.0e-92 337.4
Lsi05g00991 . 1 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 50.8 2.2e-131 466.1
Lsi07g01198 . 66 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 53.3 1.0e-146 517.3
Lsi07g01198 . 1 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.9 1.4e-165 580.1
Lsi02g02245 . 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 62.2 1.3e-90 330.1
Lsi06g00191 . 129 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 64.5 1.7e-58 223.4
Lsi06g01169 . 201 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 57.5 7.8e-43 171.4
Lsi05g02130 . 14 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.7 5.1e-154 541.6
Lsi01g00968 . 124 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 58.8 2.6e-42 169.9
Lsi03g00644 . 163 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.1 6.3e-45 178.3
Lsi04g00293 . 58 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.0 5.0e-75 278.5
Lsi09g01016 . 16 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.3 9.8e-71 264.2
Lsi06g01209 . 26 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.4 5.6e-53 204.5
Lsi04g01550 CCT,ECH 16 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.1 1.4e-46 183.3
Lsi10g00560 . 44 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.3 1.2e-42 170.2
Lsi08g01480 CCT,ECH 105 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 81.1 2.0e-37 152.9
Lsi01g01144 . 22 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 56.9 6.5e-37 151.0
Lsi01g01144 . 78 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.7 2.6e-42 169.1
Lsi05g01454 . 1 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.6 3.1e-50 195.3
Lsi04g01455 CCT 206 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 53.3 7.2e-45 178.7
Lsi04g01492 CCT,ECH 243 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 81.9 1.3e-37 153.7
Lsi11g01112 . 188 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36540 77.6 8.1e-39 157.9
Lsi02g02245 . 74 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.4 8.6e-95 343.6
Lsi06g00191 . 96 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 65.3 1.0e-63 240.4
Lsi06g01169 . 159 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 55.9 1.4e-44 176.8
Lsi11g00401 . 214 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 56.3 1.8e-39 159.8
Lsi01g00831 . 141 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 59.4 5.1e-60 228.4
Lsi08g01047 CCT 164 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.2 1.8e-52 203.4
Lsi04g02300 CCT 159 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 57.6 6.5e-47 184.9
Lsi11g01112 . 194 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 85.3 1.4e-39 161.0
Lsi09g00778 . 334 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 82.5 1.2e-38 157.9
Lsi04g00328 . 361 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 80.4 1.0e-37 154.8
Lsi11g01112 . 181 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 52.2 1.6e-43 173.7
Lsi05g01353 . 263 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.2 4.0e-39 159.1
Lsi09g00778 . 335 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 78.5 1.4e-36 150.6
Lsi04g00328 . 362 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 70.3 1.4e-36 150.6
Lsi11g01112 . 175 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G18300 79.1 2.6e-39 159.8
Lsi06g01169 . 203 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 64.7 5.4e-65 244.6
Lsi11g00401 . 212 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 59.0 1.5e-59 226.5
Lsi06g00191 . 137 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.3 2.1e-45 179.5
Lsi02g02245 . 139 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.1 4.5e-43 171.8
Lsi06g01169 . 205 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 60.8 2.7e-57 219.5
Lsi11g00401 . 218 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.3 4.0e-53 205.7
Lsi02g02245 . 150 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.1 1.1e-42 171.0
Lsi06g00191 . 148 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 63.7 1.9e-42 170.2
Lsi04g00328 . 352 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 61.6 3.9e-43 172.6
Lsi09g00778 . 325 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 77.6 6.2e-41 165.2
Lsi08g01550 CCT 193 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 57.7 8.3e-38 154.8
Lsi05g01353 . 333 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G26260 62.3 6.2e-39 158.7
Lsi02g02133 . 285 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 52.3 5.1e-43 172.2
Lsi09g00778 . 325 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 53.8 5.3e-40 162.2
Lsi11g01112 . 181 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 65.0 1.0e-38 157.9
Lsi04g01455 CCT 214 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 55.9 2.5e-37 153.3
Lsi04g00328 . 355 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 50.6 1.2e-36 151.0
Lsi11g01112 . 183 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 75.7 6.2e-38 155.6
Lsi04g00328 . 355 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 76.5 2.4e-37 153.7
Lsi09g00778 . 307 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 65.9 6.9e-37 152.1
Lsi06g01503 . 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.5 4.4e-55 211.8
Lsi08g00018 . 15 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 56.3 2.9e-52 202.2
Lsi08g00018 . 15 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 56.4 1.5e-49 193.4
Lsi06g01169 . 169 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 65.4 9.1e-59 224.2
Lsi11g00401 . 212 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 63.4 7.0e-51 198.0
Lsi06g00191 . 135 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 59.2 2.2e-44 176.4
Lsi02g02245 . 132 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 53.5 9.1e-43 171.0
Lsi03g00573 CCT,ECH 237 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.2 5.6e-39 158.7
Lsi04g01492 CCT,ECH 245 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.0 2.8e-38 156.4
Lsi08g01523 CCT,ECH 242 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 88.4 1.8e-37 153.7
Lsi02g02960 . 197 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.7 1.1e-64 244.2
Lsi04g01550 CCT,ECH 21 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 60.0 4.4e-45 178.3
Lsi10g00560 . 68 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 87.4 8.6e-41 164.1
Lsi08g01480 CCT,ECH 108 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 85.9 6.8e-38 154.5
Lsi08g00990 . 2 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.9 2.8e-55 212.6
Lsi05g01835 . 64 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 62.0 1.0e-92 337.4
Lsi05g01719 . 46 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 59.4 3.0e-40 162.5
Lsi05g00630 . 63 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 79.0 2.0e-53 206.1
Lsi10g00160 . 4 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.7 5.3e-46 181.4
Lsi02g00656 . 51 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.2 8.2e-39 157.5
Lsi03g01333 . 2 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 51.5 9.2e-52 200.7
Lsi04g01698 CCT,ECH 25 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 55.9 5.6e-44 175.6
Lsi05g00449 . 42 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.8 8.1e-118 421.0
Lsi02g00527 . 51 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.4 4.8e-102 368.6
Lsi10g00463 . 40 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.8 7.4e-51 198.0
Lsi01g00601 . 80 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 58.2 8.5e-47 184.5
Lsi02g00525 CCT 161 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 66.7 1.6e-41 166.8
Lsi09g01503 . 38 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 60.6 8.4e-44 174.1
Lsi05g01413 . 41 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 55.4 1.8e-38 156.4
Lsi09g01503 . 36 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 58.0 5.6e-45 177.9
Lsi05g01413 . 39 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 50.6 1.5e-37 153.3
Lsi07g00339 . 6 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 59.2 2.9e-43 171.8
Lsi07g00339 . 4 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 67.4 2.6e-41 165.2
Lsi07g01119 . 374 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.6 1.1e-61 235.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010773 0 2 0 0 0 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26149 PF00010 HLH 2.40E-07 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00401 Lsi_Chr11 FPKM 3.664384 1.956174 0.210496 0.199179 0.207167 0.513558 0.0 1.529851 2.15763 2.222457