Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00401 | ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGCCGTAACCAGCCGCCGGAGAACGACCCCTCTCAACTCCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCATATCCTCTCGACCGTCCCCCCTCCCTGGGAACTCCCCGCCGGCCTCACAAATCCTCACTCCGACCTCCCTCCCCAACCACCTCCGCCGTCTAATCCCGACAATGTCGCGTTTCAGATCAATGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGTCTCTGCCACCGCCGACGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGACGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATTCGATTGATCACGGTTCTGTCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCACAATCAATCTCAGCTCACAAATCTGCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGTACTCCATCTCCGGCGGCGCCTAGCTCCGGCGGTGGTGCTGCACCACCGGCTCAGCCCCGGCAGAGAGTCAGAGCTCGTAGAGGACAAGCCACAGATCCACATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCTCTACAAGAACTGGTTCCCAACGCTAACAAGGTCAGTTTCGTCTTTTCACTTTCAATTGGGACTTTTCCGATAAAGTATTATAATACAGACAAAGCTTCAATGTTGGATGAGATCATAGACTATGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTCTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACCGGCGGGGCCGGCGGACAGAACTCCGCCGAAGCTCCGTCCAGTAACGACGCGATGACGGTAACGGAGCATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCTGCCATGCAATACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAATCACGGCGTCGAAGGTCAGAGGAGATGCCCCCACCTCTCCCAGTCTGTCGGCGTTGACCGTTCAGTCAACCGCCTTGGGTAACGGCACCGTCGACAGAACCGTCAGAGACTCTGTGTCCGTTTCACGGCCGCCGTGA | 1335 | 55.21 | MRLTNSLPDLHSHRRNQPPENDPSQLHHHQLQTSLFHPSSFSSDDFLDHILSTVPPPWELPAGLTNPHSDLPPQPPPPSNPDNVAFQINDTTPAAKMAMALLQQQLLMSRGIVSATADDDSGLLPMPGNDVVEIEGSSSFKCPNSIDHGSVIPSLFNEFAGFLNASGSGHNHNQSQLTNLQGNSNSQKQNFGAPVSVSTPSPAAPSSGGGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVSFVFSLSIGTFPIKYYNTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQNSAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITASKVRGDAPTSPSLSALTVQSTALGNGTVDRTVRDSVSVSRPP | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4157224 | 4161964 | + | Lsi11G004010.1 | Lsi11g00401 | 673568 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00401 | 444 | MobiDBLite | consensus disorder prediction | 315 | 352 | - | - | |
Lsi11g00401 | 444 | MobiDBLite | consensus disorder prediction | 314 | 352 | - | - | |
Lsi11g00401 | 444 | MobiDBLite | consensus disorder prediction | 167 | 205 | - | - | |
Lsi11g00401 | 444 | Pfam | Helix-loop-helix DNA-binding domain | 232 | 295 | IPR011598 | GO:0046983 | |
Lsi11g00401 | 444 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lsi11g00401 | 444 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 38 | 404 | - | - | |
Lsi11g00401 | 444 | MobiDBLite | consensus disorder prediction | 167 | 235 | - | - | |
Lsi11g00401 | 444 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 227 | 294 | IPR011598 | GO:0046983 | |
Lsi11g00401 | 444 | MobiDBLite | consensus disorder prediction | 61 | 81 | - | - | |
Lsi11g00401 | 444 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
Lsi11g00401 | 444 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 38 | 404 | - | - | |
Lsi11g00401 | 444 | SMART | finulus | 233 | 300 | IPR011598 | GO:0046983 | |
Lsi11g00401 | 444 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 225 | 303 | IPR036638 | GO:0046983 | |
Lsi11g00401 | 444 | Gene3D | - | 222 | 302 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01169 | Lsi-Chr6:21956891 | Lsi11g00401 | Lsi-Chr11:4157224 | 4.07E-109 | dispersed | |
Lsi08g00018 | Lsi-Chr8:435166 | Lsi11g00401 | Lsi-Chr11:4157224 | 2.57E-12 | dispersed | |
Lsi11g00401 | Lsi-Chr11:4157224 | Lsi08g00756 | Lsi-Chr8:15904120 | 2.34E-22 | dispersed | |
Lsi11g00401 | Lsi-Chr11:4157224 | Lsi04g01455 | Lsi-Chr4:22304152 | 1.50E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26149 | PF00010 | HLH | 2.40E-07 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00401 | - | - | csv:101222794 | 578.17 |