Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00401 ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGCCGTAACCAGCCGCCGGAGAACGACCCCTCTCAACTCCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCATATCCTCTCGACCGTCCCCCCTCCCTGGGAACTCCCCGCCGGCCTCACAAATCCTCACTCCGACCTCCCTCCCCAACCACCTCCGCCGTCTAATCCCGACAATGTCGCGTTTCAGATCAATGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGTCTCTGCCACCGCCGACGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGACGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATTCGATTGATCACGGTTCTGTCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCACAATCAATCTCAGCTCACAAATCTGCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGTACTCCATCTCCGGCGGCGCCTAGCTCCGGCGGTGGTGCTGCACCACCGGCTCAGCCCCGGCAGAGAGTCAGAGCTCGTAGAGGACAAGCCACAGATCCACATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCTCTACAAGAACTGGTTCCCAACGCTAACAAGGTCAGTTTCGTCTTTTCACTTTCAATTGGGACTTTTCCGATAAAGTATTATAATACAGACAAAGCTTCAATGTTGGATGAGATCATAGACTATGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTCTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACCGGCGGGGCCGGCGGACAGAACTCCGCCGAAGCTCCGTCCAGTAACGACGCGATGACGGTAACGGAGCATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCTGCCATGCAATACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAATCACGGCGTCGAAGGTCAGAGGAGATGCCCCCACCTCTCCCAGTCTGTCGGCGTTGACCGTTCAGTCAACCGCCTTGGGTAACGGCACCGTCGACAGAACCGTCAGAGACTCTGTGTCCGTTTCACGGCCGCCGTGA 1335 55.21 MRLTNSLPDLHSHRRNQPPENDPSQLHHHQLQTSLFHPSSFSSDDFLDHILSTVPPPWELPAGLTNPHSDLPPQPPPPSNPDNVAFQINDTTPAAKMAMALLQQQLLMSRGIVSATADDDSGLLPMPGNDVVEIEGSSSFKCPNSIDHGSVIPSLFNEFAGFLNASGSGHNHNQSQLTNLQGNSNSQKQNFGAPVSVSTPSPAAPSSGGGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVSFVFSLSIGTFPIKYYNTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQNSAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITASKVRGDAPTSPSLSALTVQSTALGNGTVDRTVRDSVSVSRPP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4157224 4161964 + Lsi11G004010.1 Lsi11g00401 673568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00401 444 MobiDBLite consensus disorder prediction 315 352 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 314 352 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 167 205 - -
Lsi11g00401 444 Pfam Helix-loop-helix DNA-binding domain 232 295 IPR011598 GO:0046983
Lsi11g00401 444 MobiDBLite consensus disorder prediction 1 28 - -
Lsi11g00401 444 PANTHER TRANSCRIPTION FACTOR BHLH69 38 404 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 167 235 - -
Lsi11g00401 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 294 IPR011598 GO:0046983
Lsi11g00401 444 MobiDBLite consensus disorder prediction 61 81 - -
Lsi11g00401 444 MobiDBLite consensus disorder prediction 7 22 - -
Lsi11g00401 444 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 404 - -
Lsi11g00401 444 SMART finulus 233 300 IPR011598 GO:0046983
Lsi11g00401 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 303 IPR036638 GO:0046983
Lsi11g00401 444 Gene3D - 222 302 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01169 Lsi-Chr6:21956891 Lsi11g00401 Lsi-Chr11:4157224 4.07E-109 dispersed
Lsi08g00018 Lsi-Chr8:435166 Lsi11g00401 Lsi-Chr11:4157224 2.57E-12 dispersed
Lsi11g00401 Lsi-Chr11:4157224 Lsi08g00756 Lsi-Chr8:15904120 2.34E-22 dispersed
Lsi11g00401 Lsi-Chr11:4157224 Lsi04g01455 Lsi-Chr4:22304152 1.50E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26149 PF00010 HLH 2.40E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00401 - - csv:101222794 578.17