Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00402 ATGGCGGATAAAGGCAGAGACGGCGGCCACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGAACCTTCGCCAAGGTTTACCATGCCCGGAATCTGCGAACGGGTAAGAGCGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATCATCAAAGTCGGCATGACAGAACAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCTAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGCTTGTTAGAGGCGGTGAACTGTTCTCCAAAATCGCGAAAGGTCGGTTGCGAGAGGATGTGGCTAGAGTTTACTTTCAGCAATTAATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAATCTCCTACTCGACGAGGACGGTAACCTTAAAGTCACCGATTTCGGCCTCACCGCCTTCTCAGAGCACTTGAAGCAAGACGGATTGTTGCATACAACGTGCGGAACTCCGGCGTACGTCGCGCCGGAGGTCATTGGAAAGCAAGGATACGACGGCGCGAAGGCCGATCTGTGGTCTTGTGGAGTCATCCTTTATGTTCTTCTCGCCGGATACCTTCCATTTCAGGACGACAACATGGTGGCGATGTACCGGAAGATTTACAGAGGCGACTTCAAGTGTCCGTCGTGGTTCTCTCCCGAAGCCCGTCGGCTGATCACAAAGCTTCTAGATCCTAATCCGGTGAGCAGAGTCGGTATCGCGAAGATTACATCGTCATCGTGGTTCAAGAAATCGGTACCGAAGTCTCTGATTACGAAGGAGGAGCAAGAACAAACAGAGGAGAATTTGACGAAATCAAAGCCACCGGCGGAAACATTGAACGCGTTCCACATAATATCTCTATCGGAAGGGTTCGATCTGTCTCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCATCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGGGAAGGCAGTGAAGTTCGATGTGAAGAAGAGCGAATCGTGGGTTCGATTGCAGGGGCAAGAGAAAGGGAGAAAGGGGAAACTGACGATTGCGGCCGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGATACTTTGGAGTATAACCAGTTCTGCCGGAAGGAGCTCCGGCCGGCCTTGAAGGACATTGTTTGGACTTCTCCGACGGGAAACTCGACCCCAGCTTGA 1302 51.0 MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPSWFSPEARRLITKLLDPNPVSRVGIAKITSSSWFKKSVPKSLITKEEQEQTEENLTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVGKAVKFDVKKSESWVRLQGQEKGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4196553 4197854 - Lsi11G004020.1 Lsi11g00402 673569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00402 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Lsi11g00402 433 Pfam NAF domain 301 360 IPR004041 GO:0007165
Lsi11g00402 433 PANTHER - 10 430 - -
Lsi11g00402 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00402 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 430 - -
Lsi11g00402 433 SUPERFAMILY Protein kinase-like (PK-like) 15 292 IPR011009 -
Lsi11g00402 433 CDD STKc_SnRK3 17 271 - -
Lsi11g00402 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00402 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Lsi11g00402 433 CDD CIPK_C 304 419 - -
Lsi11g00402 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Lsi11g00402 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Lsi11g00402 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00402 433 Gene3D Kinase associated domain 1, KA1 299 424 - -
Lsi11g00402 433 Gene3D Transferase(Phosphotransferase) domain 1 100 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01165 Lsi-Chr6:21900407 Lsi11g00402 Lsi-Chr11:4196553 0 dispersed
Lsi10g01478 Lsi-Chr10:18893770 Lsi11g00402 Lsi-Chr11:4196553 4.33E-177 dispersed
Lsi10g01479 Lsi-Chr10:18898095 Lsi11g00402 Lsi-Chr11:4196553 8.25E-156 dispersed
Lsi11g00402 Lsi-Chr11:4196553 Lsi01g00124 Lsi-Chr1:1284522 4.31E-151 dispersed
Lsi11g00402 Lsi-Chr11:4196553 Lsi02g00815 Lsi-Chr2:7601919 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84022 PF00069 Pkinase 6.00E-73 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00402 - K07198 csv:101208458 833.172