Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00412 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAGAGTCCCACCACATCGCCGACCAATGGCCTTTTACCACCCACCCACCACCTCTCCTCCGCCGCTGCCGGCTCCGACGCCGGCCCTCATGTCGTATACCCTCACTCTGTCCCTTCCGCCGCCGTGTCCTCGTCTCCCCTCGAGCCCGCACGCCGGAAGAGAGGCCGGCCGAGGAAGTACGGAACGCCGGAGGAAGCTTTAGCGGCTAAGAAAGCTGCTACGGCGTCGTCTCACTCTTCGTCCTCTAAGGCCAAGAAGGAACTCGCTTCTTCTTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAAAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCGCCACATGTTATTAATGTGGCAGCTGGTGAGGATGTGGGACAGAAAATTATGATGTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCGATCTCCAATGCATCTCTCCGTCAGCCAGCTGCATCTGGAGGCAATATTGCATATGAGGGTCGTTTTGAGATTGTTTCATTGTGCGGATCTTATGTACGAACTGACCTCGGAGGAAAGACCGGTGGTCTTAGTGTATGTCTATCAAGTGCTGAAGGCCATATCATAGGAGGGGGAGTTGGTGGACCATTGAAGGCTGCTGGACCCGTGCAGGTTATTGTTGGAACCTTCGTAATTGACCCGAAGAAGGAAGTTGGTGGTGGTAAAGGTGATGCATCTGCTGGCAAGTTGCCCTCACCTATTGGTGGGACGTCGATGTCAAATCTACGCTATGGCTCCAACATTGACTCGGGAGGTAATCAAGTCAGGGGAAATGATGAACACCAGGGTCTTGGGGAGAGTCATTTTTTGCTTCAGCCCCGGGGAGTGAATCTGACATCACCGCGATCAACGGATTGGAGGACGGGTCTGGATGCCACAAACACTGCTTATGATTTGACAGGAAGAACAGGCCATCATTCTCCCGAAAACGGAGATTACGATCAGATTCCCGGTTGA 1086 52.3 MEPNENQLSSYFHHHQHHHQSPTTSPTNGLLPPTHHLSSAAAGSDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSASSSFSAPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMMFMQQCKREICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSSAEGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEVGGGKGDASAGKLPSPIGGTSMSNLRYGSNIDSGGNQVRGNDEHQGLGESHFLLQPRGVNLTSPRSTDWRTGLDATNTAYDLTGRTGHHSPENGDYDQIPG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4296550 4303328 + Lsi11G004120.1 Lsi11g00412 673579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00412 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 254 IPR005175 -
Lsi11g00412 361 MobiDBLite consensus disorder prediction 1 105 - -
Lsi11g00412 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 352 - -
Lsi11g00412 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 254 - -
Lsi11g00412 361 MobiDBLite consensus disorder prediction 276 300 - -
Lsi11g00412 361 ProSiteProfiles PPC domain profile profile. 137 277 IPR005175 -
Lsi11g00412 361 MobiDBLite consensus disorder prediction 316 344 - -
Lsi11g00412 361 Gene3D - 143 262 - -
Lsi11g00412 361 CDD DUF296 143 253 IPR005175 -
Lsi11g00412 361 MobiDBLite consensus disorder prediction 261 361 - -
Lsi11g00412 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 352 IPR039605 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00412 Lsi-Chr11:4296550 Lsi04g02421 Lsi-Chr4:31318792 1.69E-47 dispersed
Lsi11g00412 Lsi-Chr11:4296550 Lsi05g01307 Lsi-Chr5:20815809 1.99E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00412 - - csv:101221844 592.423