Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00415 ATGGATCTGGGAATCTCCATGAACGACAACGGTGGTCCCGTTAACAGCGGTGGCGGTGACGATGACGACGATAGAGATAACGGTGGCGATGAACCTAAAGAAGGAGCTGTTGAAGTTCCAACACGCCGTCCTCGTGGCCGCCCGCCGGGCTCCAAGAATAAGCCTAAACCACCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAGTGTTTCTGTGCTTAGTGGCAGCGGTACGGTAACGAATGTCACACTCCGACAACCGTCTGCGCCCGGTGCAGTCTTAACCCTTCACGGCCGATTCGAGATTCTTTCGTTGACTGGAACTTTCCTCCCTGGACCAGCCCCACCCGGCTCGACTGGACTAACGATCTACTTGGCCGGTGGACAAGGACAAGTGGTGGGTGGCAGTGTAGTCGGGCCACTCACCGCTGCCGGCCCGGTGATGGTGATCGCTGCAACGTTTTCCAACGCGACATACGAAAGATTACCCTTGGAAGAGGAAGAAGAAGGCGGCGGAGTTGGAGCACAAGGGCACACATCGGCAGGTGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGAGGCGGAGTTGGAGATCCGTCAGCTATGCCTCCGCTATACAATTTACCGCCGAATTTGCTGCCGAATGGCGGTGGCGGGCAGATGAACCAGGAGGCTTATTCGTGGGCTCACGGCGGCCGGCCGTCGTTTTAA 741 56.41 MDLGISMNDNGGPVNSGGGDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISSVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDGSPQGIGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4359591 4360839 - Lsi11G004150.1 Lsi11g00415 673582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00415 246 ProSiteProfiles PPC domain profile profile. 43 186 IPR005175 -
Lsi11g00415 246 Gene3D - 64 178 - -
Lsi11g00415 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 78 245 - -
Lsi11g00415 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 78 245 IPR014476 GO:0003680
Lsi11g00415 246 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 176 - -
Lsi11g00415 246 Pfam Plants and Prokaryotes Conserved (PCC) domain 75 165 IPR005175 -
Lsi11g00415 246 MobiDBLite consensus disorder prediction 1 66 - -
Lsi11g00415 246 PIRSF ESCAROLA 7 80 IPR014476 GO:0003680
Lsi11g00415 246 PIRSF ESCAROLA 77 246 IPR014476 GO:0003680
Lsi11g00415 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 2 78 - -
Lsi11g00415 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 78 IPR014476 GO:0003680
Lsi11g00415 246 MobiDBLite consensus disorder prediction 174 229 - -
Lsi11g00415 246 CDD DUF296 87 135 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00415 Lsi-Chr11:4359591 Lsi05g01697 Lsi-Chr5:24537270 3.67E-72 dispersed
Lsi11g00415 Lsi-Chr11:4359591 Lsi09g01252 Lsi-Chr9:20189174 3.12E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00415 - - csv:101220902 314.694