Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00416 ATGAATTGGCCTAGTGGTAAATATAGGAGCATGACCTTGATAAAGGGCCAAGGCCCAAGGGGTCATGGGGTCATGGGTTCAATCCATGGTGATACTGGAAATTTGCACTCGTTGGAATGCTTCCCCAGACTTAGAGGGAAGAAAATGGTAGGCAATAGTGTTCATTCAGCTTTGGCATGTGATGACATCCTCACTGAAATCCTCCTTCGTTTGCCGGAGAAATCTGTTTTCAAATTTATTCTTGTGTCCAAAAGATGGCTATACTTGATTTGTAATTTTTCTTTTCGTCGATGTTATGAAAAGCAATGGGGCGCACACACTCGTCTTTTTGGCTTTTTTGTATGCAATTTTCTTTACATTGACAGACCACAAGACGGGGTGAGGCGCCCTCGGTATGAGCCTGCACTACCTCTACTTTCAACTTGTAAAGAGAGTGATGATTTAATGTCATCTGGAATTTTAAGGAAACTTGGTTATTTTATTGACTACTCTGATGGGCTTCTTCTCTGTGGCCGGCACCCTAAACATTATTACGTCTGGGATTCCGTCACCAAGTATCGATGCCAACTTCCTCAACCTCAAAAGCACTACAAATATCTATGTACCGCATTCATGACAGAAGACCCTGGCGAAGGTGGCGGAGATATCGTATATAGAGTTGTTCGAGCAAACTGTGAATGCAAAGTTGATGTAATTAACACCATCTCCATAGAGACTTTCTCCTCACTGACTTGGACATGGAAGCAATCCACTCTTGTTTGTTCTTCAGATTTTGCTTTGAGCCCATGGACGGTGGGTACTGTGATTAATGGAGTTATCTACTGGTTTGGAACATATCGAAGTTTAGCCATTTATGATCCCGGATTTGGAGAAAGGCGCATAACTTCAATCAAGCTACCAGTCGGTCAGCTGACGCATGACTATGAGGACTCCATTTTAGGAGTGTCATCCGATGGGCTTTTGCAGTATGGTCAAAGTGGGAAGCTTGGATTGGAGACATGGGTTCTCTACAAGGAACAAGATGACTCCTCATCACCGTACACCATGGACGCTCATTGCGAGTACCAGTGGAAGTTACGACACAAATTAAGCTACAAAGACATGTGGAAGCAGAACCCAAATTCAGGTATTCGCTCTAAAGAACCTCAAATATTATCGTTCATTCGTCGAAACTCCGATTCTGTTTTCATTAGGTTGGGATCAAACATCTACCACTGTAACATCAGAAGCAAAACACTGGAAGTGATTCCCTATCATTGTGATGCTCTTTCTATTCCATGGGATTTTTGTAAAGTAGTGCCTTACTTTCAAAAGATTTGGCCCCATTCCCCGTTTCGTCTCCCCCCAAACACAGTTAAGCCTTATGCTTCATTTTCAGCTGAAGTGTTTGAAGAAAGTACCCAATCGTCAACAAGCTTCAGATTGCAGCATTTCAAATGGTTGGGTACTCCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAAGATCCAGAAGTTGCTTGGCTTGATGGACAGGTATCCAAGATTACAGGGCAGGAAGCTGAGATCGAAGCCAGCACTGGAAAAAAAGTTGTTGCAAAATTATCCAAAATATACCCCAAAGATGTGGAGGCTCCAGCTGGTGGCGTTGATGACATGACGAAGCTATCTTACTTGCACGAGCCCGGAGTTTTACAAAATTTAAAAATTCGATATGAACTCAATGAAATCTATACGTACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCAACAATACAAAGGAGCACCATTTGGAGAACTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCATACAGGGCAATGATTAATGAGGGTAAAAGCAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGAAAAACTGAAACCACAAAAATGCTCATGCGGTACCTTGCATTTTTAGGTGGCCGGGTGGCCACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATTCAGTTTGACAAGCATGGAAGAATCTCGGGAGCAGCTATCCGAACTTACCTCCTTGAGAGATCTCGTGTTTGCCAAGTTTCTGATCCTGAGCGCAATTATCACTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATTGAAAAATACAAGCTGGGAAATCCCAGGTCATTTCATTATCTAAATCAATCAAATTGCTATGAACTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATATTGTTGGAATAAGTGCTAAGGAGCAGGAAGCAATCTTTAGGGTTGTTGCTGCAATTCTTCATCTTGGAAACATTGAATTTACTAAGGGGAAAGACGTTGATTCATCTATTCCAAAAGATGACAAGGCCAAGTTCCATCTTAAAATGACTTCAGAGCTTCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGCAAGCGTGTCATGATCACCCCTGAAGAAGTGATTAAACGTAGCTTGGATCCTCAAAGTGCAGCTGTTAGTCGTGATGGTTTGGCCAAAACTATATATTCTCGACTATTTGACTGGCTGGTTGATAAAATTAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCCTGATTGGGGTCCTTGATATTTATGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAACGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATTGATTGGAGTTACATAGAGTTTGTCGACAACCAAGATGTATTAGATCTCATTGAAAAGAAACCTGGTGGAATTGTGGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAGACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTTATAAAGCCAAAACTTTCTCGAACAGATTTTACCATTGCTCATTATGCTGGAGAGGTTTTATATCAATCTGAGCAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAACATCAGGATTTGTTAGGTGCATCCAAATGTACATTTGTTGCCGGCCTTTTCCCCCCTCTAAAAGAAGAATCTGCAAAATCTTCCAAGTTTTCTTCAATTGGGTCTCGCTTTAAGCTACAACTACAAAGTTTAATGGAGACACTAAATTCCACAGAACCTCACTACATCAGATGTGTGAAGCCTAACAACCTCTTGAAACCTGCCATCTTTGAGAATGTCAACATAATGCAACAACTGCGTTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGGTACCCTACTCGCCGTGCATTCTTTGAATTCATTAACCGATTTGGAATTTTAGCTCAAGAATCCTTAGAAGGAAAAAGATTTGATATTCTGCATTCTGAAACCACCTTCCTTTTCTTGGTGAGCAGCTACGATGAAAAAGCTGTGTGCAAAAAGATATTAGAAAAGCAGGGACTTAAAGGGTTTCAGATAGGTAAGACAAAAGTATTCCTGAGGGCTGGTCAGATGGCTGAATTAGATGCTCGGAGAGCAGAGGTATTGAGTAATGCAGCAAAGACTATTCAACGGCGCACACGAACCCATATTGCTCGTAAACAGTTCATTGCATTACGAAAGGCAACCATACAAGTGCAATCTAGATGGAGAGGAAAACTGGCTTGCAAACTTTTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTCGAAGGTTTCATGCGAGAACAGCCTACAAAAGACTACAAACCTCAGTGCTTTATGTGCAAACTGGTTTAAGGACAATGGCAGCCAGGAACGAATTCAGATTTAGGAAGCAGACAAAGGCAGCAATTATCATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCATACTATAAGAAACTTCAGAGAGGCTCAATAGTTGCACAATGTAGATGGCGGGGAAAAGTTGCTAGAAAGGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGACAAGTTGGAAAAGAAAGTGGAGGAACTTACTTGGCGCATACAGTTAGAAAAACGCCTAAGGACGGACCTGGAAGAGGCAAAAGCTCAGGAGATAGCAAAATTACAAAATTCTTTGCAAGAACTGCAGAGTAAAGCTGACGAAACTAACTCATTGCTTGTAAAGGAGCGAGAGGCTGTGAAGAAGGCTGTTGAAGAAGCACCTCCCGTTATACAAGAAACCCAAGTTCTGGTTGAAGATACCAAGAAAATTGATGCTTTGACAACAGAAGTAGAAAGCTTAAAGACCTCACTGGAGACGGAGAAAAACAGAGCTGATGAATATGAGAAAAAATGTAGTGAAGTAGAACAGTTTAGAGAAGAACAACGTAAAAAGTTAGAAGATACAGAGAAAAAAGCTCATCAGCTCCAGGAGTCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGCCAACAAGCTGTGTCTATGGCACCTAATAAACTCCTCTCAGGACGGTCTAGATCAATTCTTCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACACCTTTGGATCTACACAGCCCCTCTATTAACCAAAGGGATTCAGAAGTAGAGGATAAACCTCAAAAATCACTTAATGAGAAACAGCAAGAGAATCAAGAATTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCAGGAAACAGGCCAATTGCTGCTTGTATCATCTACAAGTGCCTGCTTCAGTGGAGGTCATTCGAAGTCGAACGCACCAGTGTGTTTGATAGGATAATTCAAACTATAGGCCATGCAATTGAGACTCAGGATAACAATGACGTCTTGGCCTATTGGTTATCCAACGCTTCAACGCTTCTCTTACTGCTCCAGCGTACATTGAAAGCAAGTGGTGCTGCTGGAATGGCTCCACAACGTCGAAGATCATCGTCAGCTACACTATTTGGGAGGATGACTCAAAGTTTCCGAGGATCTCCACAAGGAGTCAATCTGTCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACACTTTAAGGCAAGTTGAAGCGAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATTAGAGATAATCTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGGGCAAGTTTGGTGAAGGGATCTTCTCGTTCTGTTGCCACCACGGAGGCCCAGCGTGCCTTAATTGCTCATTGGCAAGGAATCGTGAAGAGCCTCGGAAACTTCTTAAACACCTTAAAAGCAAATCATGTACCCCCATTTTTGGTTCGCAAAGTCTTCATTCAAATATTTTCTTTCATCAACGTTCAACTATTCAACAGGTATGCAGCTCTTCCATTTCTTGATCTTGAGATAAAATTAAAATACCAGTATGCAGGTTCTGCTTGGGACGAGTTAAAGCATATTAGACAAGCGATCGGGTTTCTGGTCATTCATCAGAAGCCAAAGAAGACACTAGATGAAATAAGTCACGATCTTTGTCCGGTACTAAGTATACAGCAGCTGTATCGTATAAGTACGATGTACTGGGACGACAAATATGGCACTCATAGTGTTTCACCTGATGTTATATCCAATATGAGGGTGTTAATGACCGAAGATTCGAACCATGCAATTAGCAATTCATTTCTATTGGACGACGATTCAAGCATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAACAAATAGACATCGGAGACATCGAACCACCGCCACTGATTCGGGAAAACTCGGGCTTTAGTTTCTTGTTGCCACGAACAGACTAA 6030 41.54 MNWPSGKYRSMTLIKGQGPRGHGVMGSIHGDTGNLHSLECFPRLRGKKMVGNSVHSALACDDILTEILLRLPEKSVFKFILVSKRWLYLICNFSFRRCYEKQWGAHTRLFGFFVCNFLYIDRPQDGVRRPRYEPALPLLSTCKESDDLMSSGILRKLGYFIDYSDGLLLCGRHPKHYYVWDSVTKYRCQLPQPQKHYKYLCTAFMTEDPGEGGGDIVYRVVRANCECKVDVINTISIETFSSLTWTWKQSTLVCSSDFALSPWTVGTVINGVIYWFGTYRSLAIYDPGFGERRITSIKLPVGQLTHDYEDSILGVSSDGLLQYGQSGKLGLETWVLYKEQDDSSSPYTMDAHCEYQWKLRHKLSYKDMWKQNPNSGIRSKEPQILSFIRRNSDSVFIRLGSNIYHCNIRSKTLEVIPYHCDALSIPWDFCKVVPYFQKIWPHSPFRLPPNTVKPYASFSAEVFEESTQSSTSFRLQHFKWLGTPVNIIVGSHVWIEDPEVAWLDGQVSKITGQEAEIEASTGKKVVAKLSKIYPKDVEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRVATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPRSFHYLNQSNCYELVDVSDAHDYLATRRAMDIVGISAKEQEAIFRVVAAILHLGNIEFTKGKDVDSSIPKDDKAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSEQFLDKNKDYVVPEHQDLLGASKCTFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAQESLEGKRFDILHSETTFLFLVSSYDEKAVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIQVQSRWRGKLACKLFKNLKREAAAVKIQKNARRFHARTAYKRLQTSVLYVQTGLRTMAARNEFRFRKQTKAAIIIQARWRCHKAASYYKKLQRGSIVAQCRWRGKVARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKLQNSLQELQSKADETNSLLVKEREAVKKAVEEAPPVIQETQVLVEDTKKIDALTTEVESLKTSLETEKNRADEYEKKCSEVEQFREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKLLSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGSPQGVNLSLINGGTSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNRYAALPFLDLEIKLKYQYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD 2009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4374341 4391281 + Lsi11G004160.1 Lsi11g00416 673583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00416 2009 PANTHER MYOSIN 485 2006 - -
Lsi11g00416 2009 Coils Coil 1374 1447 - -
Lsi11g00416 2009 ProSiteProfiles IQ motif profile. 1255 1284 IPR000048 GO:0005515
Lsi11g00416 2009 ProSiteProfiles Myosin motor domain profile. 542 1229 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 ProSiteProfiles IQ motif profile. 1232 1261 IPR000048 GO:0005515
Lsi11g00416 2009 SMART iq_5 1279 1301 IPR000048 GO:0005515
Lsi11g00416 2009 SMART iq_5 1254 1276 IPR000048 GO:0005515
Lsi11g00416 2009 SMART iq_5 1302 1324 IPR000048 GO:0005515
Lsi11g00416 2009 SMART iq_5 1350 1372 IPR000048 GO:0005515
Lsi11g00416 2009 SMART iq_5 1327 1349 IPR000048 GO:0005515
Lsi11g00416 2009 SMART iq_5 1231 1253 IPR000048 GO:0005515
Lsi11g00416 2009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1282 1380 IPR027417 -
Lsi11g00416 2009 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 488 537 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 MobiDBLite consensus disorder prediction 1591 1607 - -
Lsi11g00416 2009 ProSiteProfiles IQ motif profile. 1280 1307 IPR000048 GO:0005515
Lsi11g00416 2009 CDD MYSc_Myo11 556 1217 IPR036018 -
Lsi11g00416 2009 Pfam DIL domain 1879 1931 IPR002710 -
Lsi11g00416 2009 Pfam F-box domain 61 95 IPR001810 GO:0005515
Lsi11g00416 2009 MobiDBLite consensus disorder prediction 1570 1608 - -
Lsi11g00416 2009 Gene3D Myosin VI head, motor domain, U50 subdomain 792 1081 - -
Lsi11g00416 2009 Pfam Myosin head (motor domain) 544 1217 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 Pfam Myosin N-terminal SH3-like domain 489 531 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 ProSiteProfiles IQ motif profile. 1351 1380 IPR000048 GO:0005515
Lsi11g00416 2009 SMART MYSc_2a 536 1230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 1282 IPR027417 -
Lsi11g00416 2009 ProSiteProfiles Dilute domain profile. 1656 1952 IPR002710 -
Lsi11g00416 2009 Pfam IQ calmodulin-binding motif 1256 1275 IPR000048 GO:0005515
Lsi11g00416 2009 Pfam IQ calmodulin-binding motif 1329 1349 IPR000048 GO:0005515
Lsi11g00416 2009 Pfam IQ calmodulin-binding motif 1282 1301 IPR000048 GO:0005515
Lsi11g00416 2009 Pfam IQ calmodulin-binding motif 1234 1252 IPR000048 GO:0005515
Lsi11g00416 2009 Gene3D Kinesin motor domain 545 1142 IPR036961 -
Lsi11g00416 2009 CDD MyosinXI_CBD 1607 1975 IPR037975 GO:0007015
Lsi11g00416 2009 Coils Coil 1472 1548 - -
Lsi11g00416 2009 PANTHER MYOSIN-9 485 2006 - -
Lsi11g00416 2009 Gene3D - 919 1103 - -
Lsi11g00416 2009 Gene3D - 732 790 - -
Lsi11g00416 2009 Gene3D - 1330 1379 - -
Lsi11g00416 2009 Gene3D - 1282 1329 - -
Lsi11g00416 2009 Gene3D - 1230 1281 - -
Lsi11g00416 2009 SUPERFAMILY F-box domain 61 111 IPR036047 GO:0005515
Lsi11g00416 2009 PRINTS Myosin heavy chain signature 629 654 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 PRINTS Myosin heavy chain signature 572 591 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 PRINTS Myosin heavy chain signature 676 703 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 PRINTS Myosin heavy chain signature 909 937 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 PRINTS Myosin heavy chain signature 962 990 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi11g00416 2009 Gene3D - 1147 1227 - -
Lsi11g00416 2009 SMART DIL_2 1844 1934 IPR002710 -
Lsi11g00416 2009 ProSiteProfiles IQ motif profile. 1328 1355 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02171 Lsi-Chr2:28193940 Lsi11g00416 Lsi-Chr11:4374341 0 dispersed
Lsi05g01786 Lsi-Chr5:25176357 Lsi11g00416 Lsi-Chr11:4374341 0 dispersed
Lsi06g00306 Lsi-Chr6:3499595 Lsi11g00416 Lsi-Chr11:4374341 0 dispersed
Lsi08g00830 Lsi-Chr8:16705509 Lsi11g00416 Lsi-Chr11:4374341 0 dispersed
Lsi11g00416 Lsi-Chr11:4374341 Lsi09g01808 Lsi-Chr9:26861807 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00416 K10357 - csv:101206606 2805.01