Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00433 ATGAATGCCAATACCCATGTGATGTTATCTCTTTTCTTCGTCTTCTTAGGGCTTTTCAATGGCGTTTACTCTGCTTCTGTTCTTGCTCCACCTCCAGATCCGCCATTGTTGTTGCGATGTGGTTCTAACGATGAGGCCACTGATGATAATGGCCGAAAATGGACCTCTGATTCTAAATTCCTCGACCCAAAAAATACTGTAGCCGCACCTGCTGGATTTCAAGATCCGTCAATGACTTCGCAGGTTCCGTATATGGATGCTAGAGTTTTCACCGCCGTGACGGCGTATAAATTTCCGATCAAACCTGGTAATCGCTACTGGCTTCGACTCCATTTTTACCCTTCTACATACGGACCACATGATTCTGCAAATTCCTATTTCACCGTCACTGCGAATGATTTAATCCTTGTGAAGAATTTCAGTGCTTATATCACTTGTCAGGCCTTCACTCAGGCTTACATTGTTCGCGAGTTTACACTCGCGGCTTCGGAATCTGAATCTTTGAATTTGACTTTCACCCCTGTTACTGGATTTGCTTTTGTTAACGGGATTGAATTGATTCAAATGCCTGAGATCTTTGGGGAGGCTATAATGGTGGGTGCAAGGGAGCAAACAATGGATGTCACGGCTTCGAATATGCAGACAATGGTGAGATTGAACGTCGGCGGGAGCTACATTTCTCCGGCGAATGATTCCGGGCTGAGTAGAGCATGGTATGATGATTATCCTTATCTTTATGGTGCTTCTCAGGGTATTGTGATGGAAGCTTCTAAGAAATTGATGATTGATTATCAAGATATGCCAAAGTATATTGGGCCTGTGGAACTTTACAGGTCACTAAGATCAATGGGGTCAGCTAAGGATCTGAATATGAATTACAATTTGACATGGTTGTTTCCTAATATTGATCCAGGGTTTATGTATCTTGTGAGGTTGCATTTCTGTGATCTATCTTTGAGTAGGCCAAATCAAGTGGTGTTTGATGTGTTCATCAACAATCAAACTGCGGAAGCAACCGGAATCGATGTGATAGCTTGGGCAGGTGCTAGAGGGGTACCAAAATTCAGGGATTATGTTGTGTTCTCTAATGAAGCACCAACGATGCAGCAGATTTGGCTGGCAATGCATCCTAAGATGTCAGAGGCGCCTGAATTTGCAGATGCTATGTTGAATGGGGTCGAGATATTCAAGCTCGAATCCGGGAAGAACTTGGCAGGGAAGAATCCTCAACCCTCAGCCTTTAGGATGAAGGTTGAGGCTGAAGCGGAGAGAAATTTTGAAGTAAAAGGCAACAATGCTGAAGTGATTGGTGGGGCTGCAGGGGGTGCTGCAGCGTTTGTTGTAGTGGCACTTTGCTTTGCAGTGTACCAAAGGAAGAGCAGAATCCCAGGGACTGATTCACACACAACTAGCTGGTTGCCGATCTATGGGAATTCGCATTCGAGTGGGAGCAAATCGACGGTATCTGGGAAGAGTACGGCGAGTAATTTGGCTCAAGGTTTGGCTCGACATTTCTCACTTCCTGAGATTTTACATGCTACCAAGAACTTTAGTGAATCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGATTGATGGAGGGACAAAAGTTGCTATTAAAAGGTCGAACCCATCATCAGAACAAGGAGTTCACGAGTTCCTTACAGAAATCGATTTGCTTTCGAAGCTGAGGCACAAACATTTGGTGTCTTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTCTAGTTTATGATTACATGGGTTTAGGAACTCTAAGGGAACATCTATATAAGACCAACAACAAAACTCGTCTCCCATGGAAGCAAAGGCTAGAGATTTGTATTGGAGCAGCTAGAGGACTTCATTACCTTCACACAGGAGCACAATACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAATTGGGTTGCAAAGGTTTCTGATTTCGGGCTCTCGAAAACTGGTCCAAACATGGCCAATGGTCATGTTAGCACGGTAGTTAAAGGTAGCTTTGGCTACTTAGATCCGGAGTACTTCCGAAGGCAACAACTAACTGAAAAATCTGATGTGTATTCATTTGGAGTTGTTCTGTTTGAAGTGTTGTGTGCAAGACCTGCTCTAAATCCAAGCCTACCAAAGGAACAAGTTAGTCTTGCGGATTGGGCGTTGCATTGCAAACGAAAAGGATTTCTCGAGGATCTCATCGACCCCCACCTCAAAGGGAAAATCACCCCTGAAAGCTTGAAGAAGTTTGCAGATGCAGCTGAGAAATGCCTGGATGACCATGGAGCTGAACGACCGTCTATGGGTGATGTGTTATGGAACCTTGAATTTGCTCTCCAACTTCAGGAAAGTGCTGATGGTGGTTCGAGTCATAGCTCGAGGATACATGAGGAAGATAGGCAGAGAAGCCAAGAAATGGCTGCACATTACAACAACCTCAGCCTTGGAAGTGAGCAAGAGTTACTTCAATCTAACGAACAAAATAGTACTGCAATCTTCTCTCAACTTGTCCATCCGACAGGCCGATAA 2568 44.08 MNANTHVMLSLFFVFLGLFNGVYSASVLAPPPDPPLLLRCGSNDEATDDNGRKWTSDSKFLDPKNTVAAPAGFQDPSMTSQVPYMDARVFTAVTAYKFPIKPGNRYWLRLHFYPSTYGPHDSANSYFTVTANDLILVKNFSAYITCQAFTQAYIVREFTLAASESESLNLTFTPVTGFAFVNGIELIQMPEIFGEAIMVGAREQTMDVTASNMQTMVRLNVGGSYISPANDSGLSRAWYDDYPYLYGASQGIVMEASKKLMIDYQDMPKYIGPVELYRSLRSMGSAKDLNMNYNLTWLFPNIDPGFMYLVRLHFCDLSLSRPNQVVFDVFINNQTAEATGIDVIAWAGARGVPKFRDYVVFSNEAPTMQQIWLAMHPKMSEAPEFADAMLNGVEIFKLESGKNLAGKNPQPSAFRMKVEAEAERNFEVKGNNAEVIGGAAGGAAAFVVVALCFAVYQRKSRIPGTDSHTTSWLPIYGNSHSSGSKSTVSGKSTASNLAQGLARHFSLPEILHATKNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLVYDYMGLGTLREHLYKTNNKTRLPWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGFLEDLIDPHLKGKITPESLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGSSHSSRIHEEDRQRSQEMAAHYNNLSLGSEQELLQSNEQNSTAIFSQLVHPTGR 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4550758 4553325 - Lsi11G004330.1 Lsi11g00433 673600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00433 855 Gene3D Transferase(Phosphotransferase) domain 1 593 814 - -
Lsi11g00433 855 Pfam Protein tyrosine and serine/threonine kinase 520 783 IPR001245 GO:0004672|GO:0006468
Lsi11g00433 855 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Lsi11g00433 855 Gene3D - 211 399 - -
Lsi11g00433 855 Gene3D - 36 190 - -
Lsi11g00433 855 MobiDBLite consensus disorder prediction 798 817 - -
Lsi11g00433 855 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Lsi11g00433 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Lsi11g00433 855 SMART serkin_6 517 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00433 855 MobiDBLite consensus disorder prediction 803 817 - -
Lsi11g00433 855 Pfam Malectin-like domain 40 397 IPR024788 -
Lsi11g00433 855 PANTHER RECEPTOR-LIKE PROTEIN KINASE ANXUR2 27 837 - -
Lsi11g00433 855 ProSiteProfiles Protein kinase domain profile. 517 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00433 855 CDD STKc_IRAK 523 789 - -
Lsi11g00433 855 PANTHER OS07G0166700 PROTEIN 27 837 IPR045272 GO:0004714|GO:0006468
Lsi11g00433 855 SUPERFAMILY Protein kinase-like (PK-like) 502 786 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01624 Lsi-Chr1:14619076 Lsi11g00433 Lsi-Chr11:4550758 0 dispersed
Lsi06g01446 Lsi-Chr6:25020241 Lsi11g00433 Lsi-Chr11:4550758 8.04E-176 dispersed
Lsi07g00950 Lsi-Chr7:11908232 Lsi11g00433 Lsi-Chr11:4550758 0 dispersed
Lsi11g00433 Lsi-Chr11:4550758 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84023 PF12819 Malectin_like 2.10E-34 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00433 - - csv:101219475 1561.97