Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00444 ATGGCTGCTGCTCGGAGGATATCCTCGCTCTTATCTCGTTCTCTTCCTTCTTCGCCGGCTCTCCTTTCCAAAGGGAGGAGGCCTTTCAATGGTAGAACAACTGCCAAATATAGCACTGCGACTGCTGTTGAAGATCCTATTACTCCATCTGTGAAAGTGAATTACACGCAGTTATTAATCAATGGACAGTTTGTGGATTCAGTTTCAGGAAAAACTTTTCCTACTTTGGATCCAAGGACAGGGGAAGCCATTGCAAATGTTGCTGAAGCTGATGCTAGAGATGTTGATCTTGCAGTTTCTGCTGCACGCAAGGCGTTTGATGAAGGTCCTTGGCCTAGGATGACTGCTTATCACTCGAAACATGGGACAATGGGAAAACATATGAACAATCAGCAAAAATTGAAGTCCCGATGTTTGTACGCCTCTTTCGATACTATGGTGCTTGGCTCTTATCAATCAATGTGTTGTAATTGCCTGCATTGGCTTCACTTTACCTTAGGATGGGCGGATAAAATTCATGGACTCACAGTTCCTGCCGATGGGTCGTATCACGTGCAGACCTTGCACGAACCGATTGGTGTGGCGGGTCAGATCATTCCATGGAACTTTCCTCTCCTCATGTTTGCTTGGAAGGTTGGTCCAGCATTAGCATGTGGGAATACCGTTGTTCTGAAGACGGCTGAGCAGACACCCTTGTCTGCTCTCTTTGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGAGGGCGTTCTGAATATTGTTTCTGGTTATGGACCCACTGCTGGTGCTGCTATTGCCAGTCATATGGAAGTTGATAAGATAAATATTAAGAATCAAATGTTTCTCTGTTCCCAGCTTGCTTTTACTGGATCAACTGAAACAGGGAAGATTGTACTTGAATTAGCTGCAAAAAGCAATTTGAAGCCAGTAACATTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTAGACAAGGCTGTGGAGATGGCACACTTTGCTCTCTTCTTCAACCAAGGACAATGCTGCTGTGCAGGTTCTCGTACTTTTGTTCATGAAAAAGTATACGATGAGTTTCTAGAAAAAGCAAGGAACCGAGCTGCAAACCGCGTTGTTGGTGATCCGTTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTAAATAAGCAAGAACTAGAACAGAACATAGCAAGTTCTGTTACAAGCAAGTCAACCAACATGTTTGTGATGGTCGATGGCGAACAATTCAAAAAGATATTGAAATATATAAAATATGGGATTGAAGGAGGAGCCACTCTTGAAGCAGGAGGAGAAAGGTTTGGTTCCAAGGGTTACTATGTCCAACCAACAGTTTTCTCAAATGTCAAGGATGACATGAAAATTGCACAAGAGGAGATTTTTGGTCCTGTACAAACAATCTTGAAATACAAAGAGATCGATGAGGTGATAAGGAGGGCAAATGCTAGTCGTTATGGACTGGCTGCTGGAGTGTTTACTCAAAGAATCGACACAGCCAACCGGTTGACACGAGCGCTTAGAGTCGGGTCAGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAGTTCCTTTTGGAGGGTACAAGATGAGTGGACATGGGAGAGAAAAGGGAATTTATAGCCTTAGCAATTACCTGCAAGTGAAGGCTGTTGTGACTCCTTTGGAAAACCCTGCTTGGCTTTAG 1713 44.13 MAAARRISSLLSRSLPSSPALLSKGRRPFNGRTTAKYSTATAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEAIANVAEADARDVDLAVSAARKAFDEGPWPRMTAYHSKHGTMGKHMNNQQKLKSRCLYASFDTMVLGSYQSMCCNCLHWLHFTLGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALFVAKLLHEAGLPEGVLNIVSGYGPTAGAAIASHMEVDKINIKNQMFLCSQLAFTGSTETGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFLEKARNRAANRVVGDPFLGGIEQGPQVNKQELEQNIASSVTSKSTNMFVMVDGEQFKKILKYIKYGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMKIAQEEIFGPVQTILKYKEIDEVIRRANASRYGLAAGVFTQRIDTANRLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4619163 4625699 - Lsi11G004440.1 Lsi11g00444 673611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00444 570 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 40 315 IPR016162 GO:0016491
Lsi11g00444 570 Pfam Aldehyde dehydrogenase family 64 560 IPR015590 GO:0016491
Lsi11g00444 570 SUPERFAMILY ALDH-like 52 564 IPR016161 GO:0016491
Lsi11g00444 570 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 316 565 IPR016163 GO:0016620
Lsi11g00444 570 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 340 351 IPR016160 GO:0016491
Lsi11g00444 570 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 24 570 - -
Lsi11g00444 570 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 24 570 - -
Lsi11g00444 570 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 312 319 IPR029510 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01544 Lsi-Chr6:25796226 Lsi11g00444 Lsi-Chr11:4619163 0 dispersed
Lsi09g01486 Lsi-Chr9:22905880 Lsi11g00444 Lsi-Chr11:4619163 2.45E-53 dispersed
Lsi10g01510 Lsi-Chr10:19367032 Lsi11g00444 Lsi-Chr11:4619163 5.94E-71 dispersed
Lsi11g00399 Lsi-Chr11:4146165 Lsi11g00444 Lsi-Chr11:4619163 1.36E-47 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00444 K00128 - csv:101202756 858.211