Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00453 | ATGGCAATGAGGTATAGAAAAAACGATGACATAGTTGAAATTGATTGTGAAGAATGCTCGGTTAAAGCGAAAACTCACCGACGACGGTGGAGAATGGCCTTTGCCGCCATTTATTTCACCAGAGTTCTCATTTCTCTATCGAAGAACCTCGGCGATCGCAAGTCCCGAGTCTTCTTGCGACCGCTTTCGTATCTTACTATTGATATGCAGTTGAATGATGATATTGATGACAGTATGGATTTCGACGAGCGATCGTTCGTCAATCGAAAAGTTTTGAGCATGATGGTTAGAGAGAAGAATTTTGAGTGTTTGGATCGATTTGGAGGTGTTGAAGGATTGGCTAATCTTCTCGAAACAAACTCCAAGAGGGGAATCATCGCAACGAAAGACGATCTAATTTCTAGAGAAAGTACATTTGGAACAAATACTTATTTGAAGCTCCATTGTAGAAGCTTTATAAGTTTCGTGATCGAAGCGTTTAACGATACAACGATGATCATTCTCTTGATATGTGCAGCGCTTTCGTTGGGATTTGGTATAAAACAACACGGTTGGGACGATGGATGGTACGACGGTGGCAGCATTGTCATTGCCATAGTTCTTGTGGTTGTTGTTTCCGCCGTTAGCAACTTCAAGCAATCGAGGCAGTTTGAGAAGCTTTCAAATGAGAGAGATGACATAAAAATCGAGGTAACTAGAGCCAGTCGACGCAAATTAGTATCGATATTTGACATCGTCGTTGGAGACATTGTGTATTTGAAGATTGGAGATCAGATTCCTGCTGACGGTGTGTTCCTCGATGGACATTTGCTAAAAGTTGACGAGTCTCACATGACTGGAGAGAGTGATCATGTTGAAGTAAATCATGGAAGTAATCCATTTTTGCTATCAGGAACCAAAGTGAGTGATGGTTTTGGTGTGATGATGGTTACTTCAGTGGGAATGAACACAGCCTGGGGAGAAATGATGAGTTCAATCAGGCAGGAAATTATTGAATTCACTCCTTTGCAAGCTCGTTTAAACAAGATGACTGCGGTTATCGGGAAGCTCGGGCTAACGGTCGCCGTGCTCGTACTTCTTGTTCTTCTTATTCGCTATTTCACCAGGAGCACCAGTGAGTTCAATGGAAGCAAGACGAGGTTCAATGATATCATGAATGCAGTTCTTGAAACAGTTACGACTGCGGTTACGATTGTCGTCGTGGCGATACCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCAGATAATGCAATGGTTAGGAAACTCTCTGCTTGTGAGACAATGGGCTCAGCAACAACAATTTGTACAGATAAAACTGGCACCCTTACTTTGAATGAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATGAAATTATAGACAAAGATTTTTCCAACTCAATGATTGTGACTGAGGTTGTTGAATTGTTGCATCAAGCAGTTGGCTTGAATACAACTGGTAGTGTTCAAAGATCATCTTCTTCATTACCTCTAGAAATATTTGGGAGCCCGACTGAGAAAGCGATACTTTCTTGGGGCGTATTCGACTTGGATTTGAACCTAGATGAATTGAAGAAGCAACATGAAATAATCCAAGTGGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGAGTTTCGACAAGACGATATGGCGAGAAGTTTATCCATACACATTGGAAGGGAGCAGCAGAGATGATATTGACAATGTGCTCATATTATTACAATAAACAAGGAACAGTTAGAGCCATTGATGGCGAAGCAAGAAGACGACTTATTGCGACAATCACAACTATGGCAGGAAAAAGTCTCCGATGCATCGCCTTCGCCCACAAATTGAATGAACACAGCGAAAATGCAGAAGTTCCAACGAAACTCGACGAATCGGGATTGACATTACTCGGAATAGTTGGTTTAAAGGATCCTTGCAGGCCAGGAGTTAGAGAAGCTGTAGAATCATGTAAAGCTGCAGGAGTGGACATCAAAATGGTAACAGGTGATAACTTACACACAGCAACAGCCATAGCAATCGAATGCGGAATACTAAATCCCGACGACGATACGAACAACAACGAAGTTGTTGTCGAGGGCGTAAGATTTAGAAACTACACACATGAGGAGAGACTAGAAAAGATTGGGAACATCAAAGTAATGGCTAGATCTTCCCCATTTGACAAGCTTCTTATGGTACAATGCTTGAAGAATTTAGGCCATGTAGTGGCAGTCACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAGGCAGACATTGGTCTTTCTATGGGGATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCGGATATCGTCATTTTAGACAACAACTTTACATCGGTCGTCACGGTTTTGAAATGGGGAAGATGTGTTTACAACAACATCCAAAAGTTCATTCAATTTCAGCTCACAGTGAATGTTGCAGCATTGGTAGTGAACTTCATTGCTGCTGTGTCTTCTGGCAAAGTCCCTCTAACAGCAGTTCAACTATTATGGGTGAATCTCATAATGGACACCATGGGAGCTTTAGCCTTAGCCACTGAGCTACCAACCAATGATCTCATGGCAAAAATGTCGGTCGGTTGA | 2628 | 42.2 | MAMRYRKNDDIVEIDCEECSVKAKTHRRRWRMAFAAIYFTRVLISLSKNLGDRKSRVFLRPLSYLTIDMQLNDDIDDSMDFDERSFVNRKVLSMMVREKNFECLDRFGGVEGLANLLETNSKRGIIATKDDLISRESTFGTNTYLKLHCRSFISFVIEAFNDTTMIILLICAALSLGFGIKQHGWDDGWYDGGSIVIAIVLVVVVSAVSNFKQSRQFEKLSNERDDIKIEVTRASRRKLVSIFDIVVGDIVYLKIGDQIPADGVFLDGHLLKVDESHMTGESDHVEVNHGSNPFLLSGTKVSDGFGVMMVTSVGMNTAWGEMMSSIRQEIIEFTPLQARLNKMTAVIGKLGLTVAVLVLLVLLIRYFTRSTSEFNGSKTRFNDIMNAVLETVTTAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGEDEIIDKDFSNSMIVTEVVELLHQAVGLNTTGSVQRSSSSLPLEIFGSPTEKAILSWGVFDLDLNLDELKKQHEIIQVETFSSEKKRSGVSTRRYGEKFIHTHWKGAAEMILTMCSYYYNKQGTVRAIDGEARRRLIATITTMAGKSLRCIAFAHKLNEHSENAEVPTKLDESGLTLLGIVGLKDPCRPGVREAVESCKAAGVDIKMVTGDNLHTATAIAIECGILNPDDDTNNNEVVVEGVRFRNYTHEERLEKIGNIKVMARSSPFDKLLMVQCLKNLGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDNNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFIAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTNDLMAKMSVG | 875 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4752213 | 4754840 | + | Lsi11G004530.1 | Lsi11g00453 | 673620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00453 | 875 | SUPERFAMILY | HAD-like | 443 | 856 | IPR036412 | - | |
Lsi11g00453 | 875 | Gene3D | - | 130 | 327 | - | - | |
Lsi11g00453 | 875 | SFLD | p-type atpase | 427 | 805 | IPR044492 | - | |
Lsi11g00453 | 875 | PANTHER | CATION TRANSPORTING ATPASE | 24 | 875 | - | - | |
Lsi11g00453 | 875 | Gene3D | - | 158 | 871 | - | - | |
Lsi11g00453 | 875 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 451 | 656 | IPR023299 | GO:0000166 | |
Lsi11g00453 | 875 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 98 | 872 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Lsi11g00453 | 875 | SFLD | C1.7: P-type atpase like | 427 | 805 | - | - | |
Lsi11g00453 | 875 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 387 | 470 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00453 | 875 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 722 | 834 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00453 | 875 | Pfam | haloacid dehalogenase-like hydrolase | 442 | 766 | - | - | |
Lsi11g00453 | 875 | Gene3D | - | 442 | 797 | IPR023214 | - | |
Lsi11g00453 | 875 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 108 | 871 | IPR023298 | - | |
Lsi11g00453 | 875 | Pfam | E1-E2 ATPase | 228 | 423 | - | - | |
Lsi11g00453 | 875 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 447 | 453 | IPR018303 | - | |
Lsi11g00453 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 776 | 788 | - | - | |
Lsi11g00453 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 752 | 771 | - | - | |
Lsi11g00453 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 644 | 655 | - | - | |
Lsi11g00453 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 274 | 288 | - | - | |
Lsi11g00453 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 666 | 676 | - | - | |
Lsi11g00453 | 875 | PRINTS | P-type cation-transporting ATPase superfamily signature | 445 | 459 | - | - | |
Lsi11g00453 | 875 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 24 | 875 | - | - | |
Lsi11g00453 | 875 | Pfam | Cation transporter/ATPase, N-terminus | 108 | 175 | IPR004014 | - | |
Lsi11g00453 | 875 | Coils | Coil | 217 | 237 | - | - | |
Lsi11g00453 | 875 | SUPERFAMILY | Calcium ATPase, transduction domain A | 229 | 325 | IPR008250 | - | |
Lsi11g00453 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 752 | 768 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00453 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 601 | 619 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00453 | 875 | PRINTS | H+-transporting ATPase (proton pump) signature | 784 | 809 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00453 | 875 | Gene3D | - | 455 | 651 | IPR023299 | GO:0000166 | |
Lsi11g00453 | 875 | Pfam | Cation transporting ATPase, C-terminus | 837 | 871 | IPR006068 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01488 | Lsi-Chr4:22556570 | Lsi11g00453 | Lsi-Chr11:4752213 | 0 | dispersed | |
Lsi11g00453 | Lsi-Chr11:4752213 | Lsi11g00805 | Lsi-Chr11:9824443 | 0 | dispersed | |
Lsi11g01354 | Lsi-Chr11:22164133 | Lsi11g00453 | Lsi-Chr11:4752213 | 7.91E-76 | transposed | |
Lsi11g00453 | Lsi-Chr11:4752213 | Lsi02g02253 | Lsi-Chr2:29003705 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00453 | K01537 | - | csv:101218531 | 1468.75 |