Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00453 ATGGCAATGAGGTATAGAAAAAACGATGACATAGTTGAAATTGATTGTGAAGAATGCTCGGTTAAAGCGAAAACTCACCGACGACGGTGGAGAATGGCCTTTGCCGCCATTTATTTCACCAGAGTTCTCATTTCTCTATCGAAGAACCTCGGCGATCGCAAGTCCCGAGTCTTCTTGCGACCGCTTTCGTATCTTACTATTGATATGCAGTTGAATGATGATATTGATGACAGTATGGATTTCGACGAGCGATCGTTCGTCAATCGAAAAGTTTTGAGCATGATGGTTAGAGAGAAGAATTTTGAGTGTTTGGATCGATTTGGAGGTGTTGAAGGATTGGCTAATCTTCTCGAAACAAACTCCAAGAGGGGAATCATCGCAACGAAAGACGATCTAATTTCTAGAGAAAGTACATTTGGAACAAATACTTATTTGAAGCTCCATTGTAGAAGCTTTATAAGTTTCGTGATCGAAGCGTTTAACGATACAACGATGATCATTCTCTTGATATGTGCAGCGCTTTCGTTGGGATTTGGTATAAAACAACACGGTTGGGACGATGGATGGTACGACGGTGGCAGCATTGTCATTGCCATAGTTCTTGTGGTTGTTGTTTCCGCCGTTAGCAACTTCAAGCAATCGAGGCAGTTTGAGAAGCTTTCAAATGAGAGAGATGACATAAAAATCGAGGTAACTAGAGCCAGTCGACGCAAATTAGTATCGATATTTGACATCGTCGTTGGAGACATTGTGTATTTGAAGATTGGAGATCAGATTCCTGCTGACGGTGTGTTCCTCGATGGACATTTGCTAAAAGTTGACGAGTCTCACATGACTGGAGAGAGTGATCATGTTGAAGTAAATCATGGAAGTAATCCATTTTTGCTATCAGGAACCAAAGTGAGTGATGGTTTTGGTGTGATGATGGTTACTTCAGTGGGAATGAACACAGCCTGGGGAGAAATGATGAGTTCAATCAGGCAGGAAATTATTGAATTCACTCCTTTGCAAGCTCGTTTAAACAAGATGACTGCGGTTATCGGGAAGCTCGGGCTAACGGTCGCCGTGCTCGTACTTCTTGTTCTTCTTATTCGCTATTTCACCAGGAGCACCAGTGAGTTCAATGGAAGCAAGACGAGGTTCAATGATATCATGAATGCAGTTCTTGAAACAGTTACGACTGCGGTTACGATTGTCGTCGTGGCGATACCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCAGATAATGCAATGGTTAGGAAACTCTCTGCTTGTGAGACAATGGGCTCAGCAACAACAATTTGTACAGATAAAACTGGCACCCTTACTTTGAATGAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATGAAATTATAGACAAAGATTTTTCCAACTCAATGATTGTGACTGAGGTTGTTGAATTGTTGCATCAAGCAGTTGGCTTGAATACAACTGGTAGTGTTCAAAGATCATCTTCTTCATTACCTCTAGAAATATTTGGGAGCCCGACTGAGAAAGCGATACTTTCTTGGGGCGTATTCGACTTGGATTTGAACCTAGATGAATTGAAGAAGCAACATGAAATAATCCAAGTGGAGACTTTCAGTTCAGAGAAAAAGAGAAGCGGAGTTTCGACAAGACGATATGGCGAGAAGTTTATCCATACACATTGGAAGGGAGCAGCAGAGATGATATTGACAATGTGCTCATATTATTACAATAAACAAGGAACAGTTAGAGCCATTGATGGCGAAGCAAGAAGACGACTTATTGCGACAATCACAACTATGGCAGGAAAAAGTCTCCGATGCATCGCCTTCGCCCACAAATTGAATGAACACAGCGAAAATGCAGAAGTTCCAACGAAACTCGACGAATCGGGATTGACATTACTCGGAATAGTTGGTTTAAAGGATCCTTGCAGGCCAGGAGTTAGAGAAGCTGTAGAATCATGTAAAGCTGCAGGAGTGGACATCAAAATGGTAACAGGTGATAACTTACACACAGCAACAGCCATAGCAATCGAATGCGGAATACTAAATCCCGACGACGATACGAACAACAACGAAGTTGTTGTCGAGGGCGTAAGATTTAGAAACTACACACATGAGGAGAGACTAGAAAAGATTGGGAACATCAAAGTAATGGCTAGATCTTCCCCATTTGACAAGCTTCTTATGGTACAATGCTTGAAGAATTTAGGCCATGTAGTGGCAGTCACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAGGCAGACATTGGTCTTTCTATGGGGATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCGGATATCGTCATTTTAGACAACAACTTTACATCGGTCGTCACGGTTTTGAAATGGGGAAGATGTGTTTACAACAACATCCAAAAGTTCATTCAATTTCAGCTCACAGTGAATGTTGCAGCATTGGTAGTGAACTTCATTGCTGCTGTGTCTTCTGGCAAAGTCCCTCTAACAGCAGTTCAACTATTATGGGTGAATCTCATAATGGACACCATGGGAGCTTTAGCCTTAGCCACTGAGCTACCAACCAATGATCTCATGGCAAAAATGTCGGTCGGTTGA 2628 42.2 MAMRYRKNDDIVEIDCEECSVKAKTHRRRWRMAFAAIYFTRVLISLSKNLGDRKSRVFLRPLSYLTIDMQLNDDIDDSMDFDERSFVNRKVLSMMVREKNFECLDRFGGVEGLANLLETNSKRGIIATKDDLISRESTFGTNTYLKLHCRSFISFVIEAFNDTTMIILLICAALSLGFGIKQHGWDDGWYDGGSIVIAIVLVVVVSAVSNFKQSRQFEKLSNERDDIKIEVTRASRRKLVSIFDIVVGDIVYLKIGDQIPADGVFLDGHLLKVDESHMTGESDHVEVNHGSNPFLLSGTKVSDGFGVMMVTSVGMNTAWGEMMSSIRQEIIEFTPLQARLNKMTAVIGKLGLTVAVLVLLVLLIRYFTRSTSEFNGSKTRFNDIMNAVLETVTTAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGEDEIIDKDFSNSMIVTEVVELLHQAVGLNTTGSVQRSSSSLPLEIFGSPTEKAILSWGVFDLDLNLDELKKQHEIIQVETFSSEKKRSGVSTRRYGEKFIHTHWKGAAEMILTMCSYYYNKQGTVRAIDGEARRRLIATITTMAGKSLRCIAFAHKLNEHSENAEVPTKLDESGLTLLGIVGLKDPCRPGVREAVESCKAAGVDIKMVTGDNLHTATAIAIECGILNPDDDTNNNEVVVEGVRFRNYTHEERLEKIGNIKVMARSSPFDKLLMVQCLKNLGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDNNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFIAAVSSGKVPLTAVQLLWVNLIMDTMGALALATELPTNDLMAKMSVG 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4752213 4754840 + Lsi11G004530.1 Lsi11g00453 673620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00453 875 SUPERFAMILY HAD-like 443 856 IPR036412 -
Lsi11g00453 875 Gene3D - 130 327 - -
Lsi11g00453 875 SFLD p-type atpase 427 805 IPR044492 -
Lsi11g00453 875 PANTHER CATION TRANSPORTING ATPASE 24 875 - -
Lsi11g00453 875 Gene3D - 158 871 - -
Lsi11g00453 875 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 451 656 IPR023299 GO:0000166
Lsi11g00453 875 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 98 872 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lsi11g00453 875 SFLD C1.7: P-type atpase like 427 805 - -
Lsi11g00453 875 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 387 470 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00453 875 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 722 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00453 875 Pfam haloacid dehalogenase-like hydrolase 442 766 - -
Lsi11g00453 875 Gene3D - 442 797 IPR023214 -
Lsi11g00453 875 SUPERFAMILY Calcium ATPase, transmembrane domain M 108 871 IPR023298 -
Lsi11g00453 875 Pfam E1-E2 ATPase 228 423 - -
Lsi11g00453 875 ProSitePatterns E1-E2 ATPases phosphorylation site. 447 453 IPR018303 -
Lsi11g00453 875 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Lsi11g00453 875 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Lsi11g00453 875 PRINTS P-type cation-transporting ATPase superfamily signature 644 655 - -
Lsi11g00453 875 PRINTS P-type cation-transporting ATPase superfamily signature 274 288 - -
Lsi11g00453 875 PRINTS P-type cation-transporting ATPase superfamily signature 666 676 - -
Lsi11g00453 875 PRINTS P-type cation-transporting ATPase superfamily signature 445 459 - -
Lsi11g00453 875 PANTHER CALCIUM-TRANSPORTING ATPASE 24 875 - -
Lsi11g00453 875 Pfam Cation transporter/ATPase, N-terminus 108 175 IPR004014 -
Lsi11g00453 875 Coils Coil 217 237 - -
Lsi11g00453 875 SUPERFAMILY Calcium ATPase, transduction domain A 229 325 IPR008250 -
Lsi11g00453 875 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00453 875 PRINTS H+-transporting ATPase (proton pump) signature 601 619 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00453 875 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00453 875 Gene3D - 455 651 IPR023299 GO:0000166
Lsi11g00453 875 Pfam Cation transporting ATPase, C-terminus 837 871 IPR006068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01488 Lsi-Chr4:22556570 Lsi11g00453 Lsi-Chr11:4752213 0 dispersed
Lsi11g00453 Lsi-Chr11:4752213 Lsi11g00805 Lsi-Chr11:9824443 0 dispersed
Lsi11g01354 Lsi-Chr11:22164133 Lsi11g00453 Lsi-Chr11:4752213 7.91E-76 transposed
Lsi11g00453 Lsi-Chr11:4752213 Lsi02g02253 Lsi-Chr2:29003705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00453 K01537 - csv:101218531 1468.75