Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00454 ATGTGGAGGAACCTCATTGCACAGGCTGTGTATCAAGTGACAGTCTTGTTGGTTTTGGAATTTAAAGGAAATGTCATCTTGAATGTGGATGGAAAGGTAAAGAACACACTGATTTTCAACACTTTTGTGCTATGCCAAATCTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATATATTTGAAGGGATACACAAAAGCAAGGTGTTTTTGGCAATAGTTATGATAACTTTGGGTTTTCAAGTGGTAATGGTGGAGCTTTTGGGAAGGTTTGCAAATACTGAGAAGTTGAATTGGGGTCAATGGGGAGTATGTATTGCCATTGCAGCTTTGTCTTGGGCAATTGGATGGCTTTCCAAGTTAATACCAGTTTCTGCCCTTCATTTTCCAAGGAGAAGAAATTCAGCACCATAA 417 39.09 MWRNLIAQAVYQVTVLLVLEFKGNVILNVDGKVKNTLIFNTFVLCQIFNEFNARKMEKKNIFEGIHKSKVFLAIVMITLGFQVVMVELLGRFANTEKLNWGQWGVCIAIAALSWAIGWLSKLIPVSALHFPRRRNSAP 138
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 4754865 4755281 + Lsi11G004540.1 Lsi11g00454 673621
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00454 138 PANTHER CATION TRANSPORTING ATPASE 1 125 - -
Lsi11g00454 138 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 126 IPR023298 -
Lsi11g00454 138 Gene3D - 19 128 - -
Lsi11g00454 138 PANTHER CALCIUM-TRANSPORTING ATPASE 1 125 - -
Lsi11g00454 138 Pfam Cation transporting ATPase, C-terminus 1 123 IPR006068 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00454 Lsi-Chr11:4754865 Lsi11g00805 Lsi-Chr11:9824443 7.93E-42 dispersed
Lsi11g00454 Lsi-Chr11:4754865 Lsi02g02253 Lsi-Chr2:29003705 1.06E-45 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00454 K01537 - csv:101218531 244.973