Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g00454 | ATGTGGAGGAACCTCATTGCACAGGCTGTGTATCAAGTGACAGTCTTGTTGGTTTTGGAATTTAAAGGAAATGTCATCTTGAATGTGGATGGAAAGGTAAAGAACACACTGATTTTCAACACTTTTGTGCTATGCCAAATCTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATATATTTGAAGGGATACACAAAAGCAAGGTGTTTTTGGCAATAGTTATGATAACTTTGGGTTTTCAAGTGGTAATGGTGGAGCTTTTGGGAAGGTTTGCAAATACTGAGAAGTTGAATTGGGGTCAATGGGGAGTATGTATTGCCATTGCAGCTTTGTCTTGGGCAATTGGATGGCTTTCCAAGTTAATACCAGTTTCTGCCCTTCATTTTCCAAGGAGAAGAAATTCAGCACCATAA | 417 | 39.09 | MWRNLIAQAVYQVTVLLVLEFKGNVILNVDGKVKNTLIFNTFVLCQIFNEFNARKMEKKNIFEGIHKSKVFLAIVMITLGFQVVMVELLGRFANTEKLNWGQWGVCIAIAALSWAIGWLSKLIPVSALHFPRRRNSAP | 138 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4754865 | 4755281 | + | Lsi11G004540.1 | Lsi11g00454 | 673621 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g00454 | 138 | PANTHER | CATION TRANSPORTING ATPASE | 1 | 125 | - | - | |
| Lsi11g00454 | 138 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 1 | 126 | IPR023298 | - | |
| Lsi11g00454 | 138 | Gene3D | - | 19 | 128 | - | - | |
| Lsi11g00454 | 138 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 125 | - | - | |
| Lsi11g00454 | 138 | Pfam | Cation transporting ATPase, C-terminus | 1 | 123 | IPR006068 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi11g00454 | Lsi-Chr11:4754865 | Lsi11g00805 | Lsi-Chr11:9824443 | 7.93E-42 | dispersed | |
| Lsi11g00454 | Lsi-Chr11:4754865 | Lsi02g02253 | Lsi-Chr2:29003705 | 1.06E-45 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g00454 | K01537 | - | csv:101218531 | 244.973 |