Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00467 | ATGGTCTCTCAGATCTTGAGCTTGATTACTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATTACAGAGCATTTGATGAATATGAAGGAATTGAGGTCGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCATAGAAATATTATGAAATTCTATACTTCTTGGGTTGATGTTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACTCTTAGACAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGCCTTCATTATTTGCATAGCCATGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTCAGGAAATCTCATGCTGATCATTGTGTGGGTATGTGTTACAAATTCACAGGGACACCAGAGTTTATGGCTCCAGAAGTGTATGCAGAGGCATACAACGAATTAGTCGATATTTACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTCGAATATCCATACAGCGAATGCACGCATCCCGCTCAAATCTATAAGAAAGTCATATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCGGAAGTGCGGCAATTCATTGACAAGTGTTTGGCATCGGTTTCATATAGGCTCTCGGCAGCGGAGCTTTTGAATGACCCTTTTCTTCAAATCGATAATGGTGAATACGATCTAAGACCTGTCGATTACGGAAGAGGATTGGACGACGTTTGCCCTCTTATAAGACAGCCTTATCTAGAACTTCATAGAAGTGACAGCTCCTTTTGTAATGGATATACATATGATTATAGTTTTGAAGCTTCAAGTGAATCAGGTTACCATCCAATTGATAATGAAACCAATGGAATTGAGCTTTTTGAGTATTGTGAAGGTGAACATTCTGAAGATGTTGATATTAGCATTAAGGGGAAGATGAGAGAAGATGGTGGCATCTTCTTAAGACTCAGAATTGCAGATAAAGAAGGGCGTATCAGGAACATTTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGTGTTGCGACAGAAATGGTTGCGGAGCTGGATATTACAGATCAAGATGTGACCAGAATTGCTGATATGATCGACGGAGAAATTGCTTCCTTGGTGCCTGAATGGAGGCCAGGTCCGGGAATTGAGGAAACACCCCGCTTTGCAAATCAAAGCTATTGTCATAATTGTTCTACTACTACTTACAACAATGCTTCAAATGGTCTTTTGTTGAGAAATCCTGATGGAAAGAACTCAGAGGTAGCTCAATGCTGTGGGCATAGATATGCTTCAATGCACGGTCGTTTTGAGGAGATAATGTATCAAGCTGACGAATCCGAGCATCATGCAGCAGAGGGTGCACCGATTGTGTCGAGCCATTCTGATTGCCTGAATTATCCTGAAATATGGGGACATCATGAAAGCCGTGAACTGAGTTCAATGAGCTCACGACAAAGCCATTCGGATGAAGATTACGAGAAAACAGATCGACCAGTTACAGTCACGGACACAAAAGAAATGATAATGGAAAGTAAAACTGCTCCTAATACGAGACGTACGCTTAGAAGCCTGATGAATTCCCTTTCTTTCTCAGAAACCCCTTCTCCTCCAGATATTAGTGAGAATGATGTCCAACAAGAAATGAGATGGATTAAGGCCAAGTACCAAATAGAATTAAGCAAGCTCAGAGATCAACAGTTAAATCTTTCTTCAAAAGCTTCAAGTTTTGAAGACAGACAACAAAAAATGGATTATGGGACTCTTCAAGGCAACTACAACCAAATCCTTGACAGGTCTTCTCGAGACACGAACCGAAGTAGTACTGATAGCCATGTTTATATCAACAATAGCTGTTACAGTACAGATGCGCACAACCAAAGGGCTCGAAATCGCAAGGCTGTGGAGTCCCCTATTGTGGAGAAAGTTGCCACTGCCAAAAGTGCCTGCACTGCTAGGGTTTTGCGCTCTCTTTTATCATCCCAAATTAGGACTCTCCTCTTCGCCGTCGCCTTCTTCGAGCTCCAAACCTCCCGTCCTCTTCAGAGCGTCTCAGCCATGGCGGACAAAGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAGTTTGTCATTGATGTTCTTCACCCAGGCAGACCCAACGTCTCAAAGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAAAACAGGGCAAAGAAAATCCGTGGTGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATAA | 2466 | 42.05 | MVSQILSLITLNLLKLIPLADMADYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDVANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGMCYKFTGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFIDKCLASVSYRLSAAELLNDPFLQIDNGEYDLRPVDYGRGLDDVCPLIRQPYLELHRSDSSFCNGYTYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGGIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFANQSYCHNCSTTTYNNASNGLLLRNPDGKNSEVAQCCGHRYASMHGRFEEIMYQADESEHHAAEGAPIVSSHSDCLNYPEIWGHHESRELSSMSSRQSHSDEDYEKTDRPVTVTDTKEMIMESKTAPNTRRTLRSLMNSLSFSETPSPPDISENDVQQEMRWIKAKYQIELSKLRDQQLNLSSKASSFEDRQQKMDYGTLQGNYNQILDRSSRDTNRSSTDSHVYINNSCYSTDAHNQRARNRKAVESPIVEKVATAKSACTARVLRSLLSSQIRTLLFAVAFFELQTSRPLQSVSAMADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK | 821 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4910270 | 4925404 | + | Lsi11G004670.1 | Lsi11g00467 | 673634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00467 | 821 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 747 | 791 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Lsi11g00467 | 821 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK1 | 25 | 716 | - | - | |
Lsi11g00467 | 821 | MobiDBLite | consensus disorder prediction | 532 | 557 | - | - | |
Lsi11g00467 | 821 | SMART | serkin_6 | 25 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00467 | 821 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 134 | 146 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00467 | 821 | CDD | STKc_WNK | 25 | 274 | - | - | |
Lsi11g00467 | 821 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 25 | 716 | - | - | |
Lsi11g00467 | 821 | Gene3D | Transferase(Phosphotransferase) domain 1 | 93 | 279 | - | - | |
Lsi11g00467 | 821 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 370 | 424 | IPR024678 | GO:0004674|GO:0005524 | |
Lsi11g00467 | 821 | SUPERFAMILY | Protein kinase-like (PK-like) | 25 | 275 | IPR011009 | - | |
Lsi11g00467 | 821 | MobiDBLite | consensus disorder prediction | 778 | 821 | - | - | |
Lsi11g00467 | 821 | Pfam | Protein kinase domain | 31 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00467 | 821 | Gene3D | - | 743 | 788 | - | - | |
Lsi11g00467 | 821 | Gene3D | Phosphorylase Kinase; domain 1 | 22 | 91 | - | - | |
Lsi11g00467 | 821 | ProSiteProfiles | Protein kinase domain profile. | 1 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00467 | 821 | Gene3D | - | 367 | 434 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi06g00807 | Lsi11g00467 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00807 | Lsi-Chr6:16961907 | Lsi11g00467 | Lsi-Chr11:4910270 | 0 | transposed | |
Lsi06g00813 | Lsi-Chr6:17045015 | Lsi11g00467 | Lsi-Chr11:4910270 | 6.68E-42 | transposed | |
Lsi09g00148 | Lsi-Chr9:1497210 | Lsi11g00467 | Lsi-Chr11:4910270 | 1.49E-140 | transposed | |
Lsi10g01482 | Lsi-Chr10:18920267 | Lsi11g00467 | Lsi-Chr11:4910270 | 3.40E-149 | transposed | |
Lsi11g00467 | Lsi-Chr11:4910270 | Lsi09g01322 | Lsi-Chr9:21071199 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84025 | PF00069 | Pkinase | 4.00E-44 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00467 | K08867 | - | csv:101219552 | 1256.51 |