Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00467 ATGGTCTCTCAGATCTTGAGCTTGATTACTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATTACAGAGCATTTGATGAATATGAAGGAATTGAGGTCGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCATAGAAATATTATGAAATTCTATACTTCTTGGGTTGATGTTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACTCTTAGACAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGCCTTCATTATTTGCATAGCCATGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTCAGGAAATCTCATGCTGATCATTGTGTGGGTATGTGTTACAAATTCACAGGGACACCAGAGTTTATGGCTCCAGAAGTGTATGCAGAGGCATACAACGAATTAGTCGATATTTACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTCGAATATCCATACAGCGAATGCACGCATCCCGCTCAAATCTATAAGAAAGTCATATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCGGAAGTGCGGCAATTCATTGACAAGTGTTTGGCATCGGTTTCATATAGGCTCTCGGCAGCGGAGCTTTTGAATGACCCTTTTCTTCAAATCGATAATGGTGAATACGATCTAAGACCTGTCGATTACGGAAGAGGATTGGACGACGTTTGCCCTCTTATAAGACAGCCTTATCTAGAACTTCATAGAAGTGACAGCTCCTTTTGTAATGGATATACATATGATTATAGTTTTGAAGCTTCAAGTGAATCAGGTTACCATCCAATTGATAATGAAACCAATGGAATTGAGCTTTTTGAGTATTGTGAAGGTGAACATTCTGAAGATGTTGATATTAGCATTAAGGGGAAGATGAGAGAAGATGGTGGCATCTTCTTAAGACTCAGAATTGCAGATAAAGAAGGGCGTATCAGGAACATTTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGTGTTGCGACAGAAATGGTTGCGGAGCTGGATATTACAGATCAAGATGTGACCAGAATTGCTGATATGATCGACGGAGAAATTGCTTCCTTGGTGCCTGAATGGAGGCCAGGTCCGGGAATTGAGGAAACACCCCGCTTTGCAAATCAAAGCTATTGTCATAATTGTTCTACTACTACTTACAACAATGCTTCAAATGGTCTTTTGTTGAGAAATCCTGATGGAAAGAACTCAGAGGTAGCTCAATGCTGTGGGCATAGATATGCTTCAATGCACGGTCGTTTTGAGGAGATAATGTATCAAGCTGACGAATCCGAGCATCATGCAGCAGAGGGTGCACCGATTGTGTCGAGCCATTCTGATTGCCTGAATTATCCTGAAATATGGGGACATCATGAAAGCCGTGAACTGAGTTCAATGAGCTCACGACAAAGCCATTCGGATGAAGATTACGAGAAAACAGATCGACCAGTTACAGTCACGGACACAAAAGAAATGATAATGGAAAGTAAAACTGCTCCTAATACGAGACGTACGCTTAGAAGCCTGATGAATTCCCTTTCTTTCTCAGAAACCCCTTCTCCTCCAGATATTAGTGAGAATGATGTCCAACAAGAAATGAGATGGATTAAGGCCAAGTACCAAATAGAATTAAGCAAGCTCAGAGATCAACAGTTAAATCTTTCTTCAAAAGCTTCAAGTTTTGAAGACAGACAACAAAAAATGGATTATGGGACTCTTCAAGGCAACTACAACCAAATCCTTGACAGGTCTTCTCGAGACACGAACCGAAGTAGTACTGATAGCCATGTTTATATCAACAATAGCTGTTACAGTACAGATGCGCACAACCAAAGGGCTCGAAATCGCAAGGCTGTGGAGTCCCCTATTGTGGAGAAAGTTGCCACTGCCAAAAGTGCCTGCACTGCTAGGGTTTTGCGCTCTCTTTTATCATCCCAAATTAGGACTCTCCTCTTCGCCGTCGCCTTCTTCGAGCTCCAAACCTCCCGTCCTCTTCAGAGCGTCTCAGCCATGGCGGACAAAGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAGTTTGTCATTGATGTTCTTCACCCAGGCAGACCCAACGTCTCAAAGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAAAACAGGGCAAAGAAAATCCGTGGTGTTAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATAA 2466 42.05 MVSQILSLITLNLLKLIPLADMADYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDVANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGMCYKFTGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFIDKCLASVSYRLSAAELLNDPFLQIDNGEYDLRPVDYGRGLDDVCPLIRQPYLELHRSDSSFCNGYTYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGGIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFANQSYCHNCSTTTYNNASNGLLLRNPDGKNSEVAQCCGHRYASMHGRFEEIMYQADESEHHAAEGAPIVSSHSDCLNYPEIWGHHESRELSSMSSRQSHSDEDYEKTDRPVTVTDTKEMIMESKTAPNTRRTLRSLMNSLSFSETPSPPDISENDVQQEMRWIKAKYQIELSKLRDQQLNLSSKASSFEDRQQKMDYGTLQGNYNQILDRSSRDTNRSSTDSHVYINNSCYSTDAHNQRARNRKAVESPIVEKVATAKSACTARVLRSLLSSQIRTLLFAVAFFELQTSRPLQSVSAMADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4910270 4925404 + Lsi11G004670.1 Lsi11g00467 673634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00467 821 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 747 791 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lsi11g00467 821 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 25 716 - -
Lsi11g00467 821 MobiDBLite consensus disorder prediction 532 557 - -
Lsi11g00467 821 SMART serkin_6 25 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00467 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Lsi11g00467 821 CDD STKc_WNK 25 274 - -
Lsi11g00467 821 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 25 716 - -
Lsi11g00467 821 Gene3D Transferase(Phosphotransferase) domain 1 93 279 - -
Lsi11g00467 821 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 370 424 IPR024678 GO:0004674|GO:0005524
Lsi11g00467 821 SUPERFAMILY Protein kinase-like (PK-like) 25 275 IPR011009 -
Lsi11g00467 821 MobiDBLite consensus disorder prediction 778 821 - -
Lsi11g00467 821 Pfam Protein kinase domain 31 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00467 821 Gene3D - 743 788 - -
Lsi11g00467 821 Gene3D Phosphorylase Kinase; domain 1 22 91 - -
Lsi11g00467 821 ProSiteProfiles Protein kinase domain profile. 1 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00467 821 Gene3D - 367 434 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00807 Lsi11g00467 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00807 Lsi-Chr6:16961907 Lsi11g00467 Lsi-Chr11:4910270 0 transposed
Lsi06g00813 Lsi-Chr6:17045015 Lsi11g00467 Lsi-Chr11:4910270 6.68E-42 transposed
Lsi09g00148 Lsi-Chr9:1497210 Lsi11g00467 Lsi-Chr11:4910270 1.49E-140 transposed
Lsi10g01482 Lsi-Chr10:18920267 Lsi11g00467 Lsi-Chr11:4910270 3.40E-149 transposed
Lsi11g00467 Lsi-Chr11:4910270 Lsi09g01322 Lsi-Chr9:21071199 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84025 PF00069 Pkinase 4.00E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00467 K08867 - csv:101219552 1256.51