Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00478 ATGGGTAAGTGTCTTAGGGAGGTCGATAATATGCTTGTGTTGTTCGAGACCTCGGCGGGCTTTGCCCTGTTTAAAGTTTTGGATGAAGGGAAACTCTCCAAAGTTGAGGATTTGTGGAAGGATTTTTCCAGTGCAGAATCTGCTAGACAGGTGGTGAAGCTGAAGGCTTTTTCTAAGTTTGAGAACATGTCAGAAGCCTTGGAAGCAACCACATTGTTGATTGACAGCAAACCTAGCAAAGGTTTGCGGAAGTTTTTACGAGCCAACTGTGATGGGGAAACCTTGGGTGTTGCTGATTCTAAACTTGGAAATATAATTAAAGAGAAGCTGCAAATAGATTGTGTGCACAACAATTCTGTTATGGAGTTAATAAGAGGTTTAAGAAATCAATTAAACGATCTCATTTCCGGCCTGGCTGTTCAAGATTTGGCACCAATGAGCTTGGGATTATCTCATAGTTTGTCTAGGTATAAACTGAAGTTCAGTGCTGATAAGGTTGATACAATGATCATACAAGCTATTGGATTGCTTGATGATCTTGACAAGGAGTTGAATACTTACGCAATGCGGGTTAGGGAGTGGTATGGTTGGCATTTTCCAGAGCTTGCTAAAATTATTCAGGATAACATTCAATATGCCAAGACAGTGAAATCAATGGGCAACCGTGACAATGCAGCCAAGCTTGATTTCTCTGAGATACTGCCGGAGGAGGTTGAGACTGAGCTGAAGGAGGCATCTATGATATCAATGGGAACTGAAGTTAGTGAACTTGACTTGATAAATATTAGAGAGCTCTGTGACCAGGTCCTTTCTCTTTCTGAATACAGAGCCCAACTGTACGATTATCTAAAAAGTAGAATGAACACTATTGCTCCTAATTTGACTGCACTCGTCGGAGAGCTTGTTGGTGCTCGCCTAATTGCCCATGGTGGCAGTTTACTTAACCTTGCTAAGCAGCCTGGAAGCACAGTGCAAATTCTTGGAGCTGAGAAGGCTCTGTTTAGAGCTCTGAAAACAAAGCATGCAACTCCCAAATATGGTCTTATCTACCATGCATCCCTAATTGGTCAGGCAGCTCCAAAGCTCAAAGGAAAAATTTCTCGGTCTCTTGCTGCTAAAACTGCATTGGCCATTAGGTGTGATGCTTTGGGTGATGGCCAAGATAATTCCATGGGACTTGAAAACCGTGCCAAGCTGGAAGCAAGATTAAGGAGCCTTGAGGGTAGAGAGTTGGGACGTGTTGCTGGGTCGGCTAAAGGCAAACCCAAAATTGAGGCCTATGACAAAGACCGAAAGAAGAGCATTGGAGGCTTGATAACTGCGGCCAAGACATATAATCCCGCAGCCGATTCACTCCTTGGAAAACTTGAGAAGGCTAAAGAGGAGGAAGCAGAGGCTCCAGTAACCGGTGAAGAGAAGAAAGAAAAGAAGAAGAAAAAGAAGAGGGTAGAAGAAGAGGAAGCAGTTATGGAGGATGATTCAAAACCAGAAGTTGAAAATGTGGGGAAAGATGAGAAGAAGAAGAAAAAGAAGAAACGAACAGAAGAGGCTGAAGAAGTACAAGATGATGGTGAGGAGAAGGAAAAGAAGAAGAAAAAGAAGAGAAAGCATGCAGAAGACGAAGAAGAGGAAGCCGAACAGCCAAGCAAGAAGAAAGAGAAGAAGAAGAAGAAGAAAAATTCTGATTTTCATGGAGAAAACTTCCTTCTAGTTGAAGAGCTTCTTGCATTAGTCACTCTCTCTTCCACAAGGGAATATGTGTGGTCTCTTGAATTTTTGGTGGATGGGGAAATTCAAAGACTAATTTTTACCTGGACACTTATTTTGTTCATTCACCAACGACCTCATACTTCACCACCGGAGAGAGAAGAAGAAGAACAAGAAGAAGAAGTAGAAGAAGAAGAGATACAGAGAGGCGTTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCAAGGATAAGAAGGAGAAGAGTGCTGAATGTGGTGATGATTTGGAAAGAAAAGAAGCTGGTGTGGCTGTTGTTGATGTTGCTCAGGAGGAAGAGCATGGCCATGGGGCTCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTTGAAACCTAACCCCAGGCTGAGTAATTTGCCAAAGCAATCTCAGGGGGAGCAGGTGGCTGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCCGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATACTGACTGGTAAAGTCGTTGCACTGAAGAAGGTTCGTTTTGACAATTTGGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAGATTCTCATTTTGCGACGCCTAGATCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTGCTGCAAATCCATCCATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTCCTATCAGGACTCGAGCATTGTCACAGCCACAGGGTTCTTCATCGCGATATTAAAGGTTCAAATCTTCTTATCGATGGTGAAGGGTTGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAACACAAGCACCCATTAACTAATCGTGTTGTAACCTTATGGTATCGATCCCCTGAGCTTCTACTTGGTGCGATTCACTATGGTGTAGGCATCGACCTTTGGAGTGCAGGTTGTATTTTAGCAGAGTTATTAGCTGGGAGGGCCATAATGCCTGGCCGTACGGAGGTTGAGCAACTACATAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAATATTTAAAGAGAGCAAAGTTGCCAAATGCAGCCTTATTTAGACCTCGAGAACCTTATAAGAGATGTATAAAAGAGACTTTTAAGGATTTCCCACCATCGTCATTTCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCTGAGAGAATGACAGCTACAGATGCATTGAAGAGCGAGTTTTTCACTACAGAGCCTTTTTCTTGTGAACCTTCTAGCCTTCCCAAATATCCACCTAGTAAGGAGATGGATGCCAAACGACGGGATGATGAAGCGCGAAGACAAAGAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACACGCACACGTAACCGTGCTGGTAGGGCCATACCTATTCAAGGAGCCAATGCAGAGCTCCAATCAAATATTGATGTACGTCTAACTTCGAAAAAGTTAGGATTGTTCTTTCTGACTTCTGACATGCCTGTTTTTCTGAAACAGAGACGGCGTCTAATTACTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCCCCTCCACATCAGGATGGGGCACTCGGATTCACATTGGGATATTCACGTCATATTGATCCAGCTGTTGTTCCTTCTGATGTTCCTTTTAGTTCCACATCATTTGGCTATCCAAATGAACTGGACCAAGCCTGGTCGGGTCCATTGGTTCAGTCTTCTGACATCGGTGCTCAAAGGCAGAAGCATTTGGGAGGTGATGCAAGAGAACAGCAATCTTCAGTTAAAGGAAAGAAGACAGCTTGA 3660 43.25 MGKCLREVDNMLVLFETSAGFALFKVLDEGKLSKVEDLWKDFSSAESARQVVKLKAFSKFENMSEALEATTLLIDSKPSKGLRKFLRANCDGETLGVADSKLGNIIKEKLQIDCVHNNSVMELIRGLRNQLNDLISGLAVQDLAPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNIQYAKTVKSMGNRDNAAKLDFSEILPEEVETELKEASMISMGTEVSELDLINIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKLKGKISRSLAAKTALAIRCDALGDGQDNSMGLENRAKLEARLRSLEGRELGRVAGSAKGKPKIEAYDKDRKKSIGGLITAAKTYNPAADSLLGKLEKAKEEEAEAPVTGEEKKEKKKKKKRVEEEEAVMEDDSKPEVENVGKDEKKKKKKKRTEEAEEVQDDGEEKEKKKKKKRKHAEDEEEEAEQPSKKKEKKKKKKNSDFHGENFLLVEELLALVTLSSTREYVWSLEFLVDGEIQRLIFTWTLILFIHQRPHTSPPEREEEEQEEEVEEEEIQRGVSREVASRNLADSKDKKEKSAECGDDLERKEAGVAVVDVAQEEEHGHGAQPLTKEQRRKLKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGLLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGAIHYGVGIDLWSAGCILAELLAGRAIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYKRCIKETFKDFPPSSFPLIETLLAIDPAERMTATDALKSEFFTTEPFSCEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTRTRNRAGRAIPIQGANAELQSNIDVRLTSKKLGLFFLTSDMPVFLKQRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNELDQAWSGPLVQSSDIGAQRQKHLGGDAREQQSSVKGKKTA 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5048834 5061021 + Lsi11G004780.1 Lsi11g00478 673645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00478 1219 ProSiteProfiles Protein kinase domain profile. 744 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 680 716 - -
Lsi11g00478 1219 PANTHER NUCLEOLAR PROTEIN 58 11 560 - -
Lsi11g00478 1219 Coils Coil 473 493 - -
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 680 701 - -
Lsi11g00478 1219 SMART NOSIC_2 169 221 IPR012976 -
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 1032 1078 - -
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 635 664 - -
Lsi11g00478 1219 Gene3D - 139 294 - -
Lsi11g00478 1219 SMART serkin_6 744 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 460 551 - -
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 1187 1219 - -
Lsi11g00478 1219 CDD STKc_CDK9_like 744 1028 - -
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 615 664 - -
Lsi11g00478 1219 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 11 560 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 1200 1219 - -
Lsi11g00478 1219 Gene3D Nop domain 295 407 IPR042239 -
Lsi11g00478 1219 Pfam NOP5NT (NUC127) domain 12 75 IPR012974 -
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 1046 1075 - -
Lsi11g00478 1219 MobiDBLite consensus disorder prediction 460 559 - -
Lsi11g00478 1219 Pfam Protein kinase domain 744 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00478 1219 ProSiteProfiles Nop domain profile. 290 408 IPR002687 -
Lsi11g00478 1219 SUPERFAMILY Protein kinase-like (PK-like) 739 1033 IPR011009 -
Lsi11g00478 1219 ProSitePatterns Serine/Threonine protein kinases active-site signature. 864 876 IPR008271 GO:0004672|GO:0006468
Lsi11g00478 1219 ProSitePatterns Protein kinases ATP-binding region signature. 750 773 IPR017441 GO:0005524
Lsi11g00478 1219 Gene3D Transferase(Phosphotransferase) domain 1 827 1068 - -
Lsi11g00478 1219 Coils Coil 503 544 - -
Lsi11g00478 1219 Gene3D Phosphorylase Kinase; domain 1 731 826 - -
Lsi11g00478 1219 SUPERFAMILY Nop domain 163 407 IPR036070 -
Lsi11g00478 1219 Pfam snoRNA binding domain, fibrillarin 176 404 IPR002687 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00186 Lsi11g00478 CCT
Lsi06g00186 Lsi11g00478 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01631 Lsi-Chr6:26603737 Lsi11g00478 Lsi-Chr11:5048834 1.85E-101 dispersed
Lsi01g01107 Lsi-Chr1:9154622 Lsi11g00478 Lsi-Chr11:5048834 1.20E-136 transposed
Lsi01g02044 Lsi-Chr1:28227070 Lsi11g00478 Lsi-Chr11:5048834 7.13E-33 transposed
Lsi02g00092 Lsi-Chr2:769670 Lsi11g00478 Lsi-Chr11:5048834 4.87E-180 transposed
Lsi02g00524 Lsi-Chr2:4517223 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
Lsi03g00150 Lsi-Chr3:2110348 Lsi11g00478 Lsi-Chr11:5048834 1.95E-171 transposed
Lsi04g00536 Lsi-Chr4:4961347 Lsi11g00478 Lsi-Chr11:5048834 2.09E-28 transposed
Lsi05g00144 Lsi-Chr5:2112119 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
Lsi05g01501 Lsi-Chr5:22835363 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
Lsi08g00053 Lsi-Chr8:1230141 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
Lsi08g00253 Lsi-Chr8:5723596 Lsi11g00478 Lsi-Chr11:5048834 4.12E-142 transposed
Lsi09g01691 Lsi-Chr9:25398100 Lsi11g00478 Lsi-Chr11:5048834 7.20E-10 transposed
Lsi10g00900 Lsi-Chr10:13344499 Lsi11g00478 Lsi-Chr11:5048834 3.65E-12 transposed
Lsi10g00941 Lsi-Chr10:13838210 Lsi11g00478 Lsi-Chr11:5048834 1.17E-112 transposed
Lsi11g00052 Lsi-Chr11:603489 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
Lsi11g00478 Lsi-Chr11:5048834 Lsi06g00186 Lsi-Chr6:2017295 1.26E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84026 PF00069 Pkinase 6.30E-66 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00478 K08819 - csv:101217497 1065.45