Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00482 ATGGTGAAAGCTGTAGCTGTTCTTGAGAGCAATCAGGGAGTCAGTGGAACTGTCTTCTTTAGCCAAAATGGCAATGGTCCGACTACAGTTACAGGAAATATTTCTGGTCTTAAGGCAGGGCTTCATGGCTTCCATGTTCATGCCTTTGGGGACACAACCAATGGTTGCTTATCAACTGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCCGATGATGAGAATCGTCATGTTGGTGATCTTGGAAATTTGGTTGCCGGTGATGATGGTACTGCTACTTTCTCTATTATTGACAAGCAGATTTCCCTCGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATAGGTTGTGGTAAGCGTTATTGGGCTGCAAGAGTGATGGAGTACACTTCGACTTGCATGGTCTATAATGATGAAGTACAGTGTATGTAA 516 46.32 MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTGPHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERIGCGKRYWAARVMEYTSTCMVYNDEVQCM 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5089329 5093919 - Lsi11G004820.1 Lsi11g00482 673649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00482 171 Gene3D Superoxide dismutase, copper/zinc binding domain 1 152 IPR036423 GO:0006801|GO:0046872
Lsi11g00482 171 Pfam Copper/zinc superoxide dismutase (SODC) 14 146 IPR001424 GO:0006801|GO:0046872
Lsi11g00482 171 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 1 146 IPR024134 -
Lsi11g00482 171 CDD Cu-Zn_Superoxide_Dismutase 2 145 IPR001424 GO:0006801|GO:0046872
Lsi11g00482 171 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 43 53 IPR018152 -
Lsi11g00482 171 SUPERFAMILY Cu,Zn superoxide dismutase-like 2 147 IPR036423 GO:0006801|GO:0046872
Lsi11g00482 171 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 146 - -
Lsi11g00482 171 PRINTS Cu-Zn-superoxide dismutase family signature 79 88 IPR001424 GO:0006801|GO:0046872
Lsi11g00482 171 PRINTS Cu-Zn-superoxide dismutase family signature 123 149 IPR001424 GO:0006801|GO:0046872
Lsi11g00482 171 PRINTS Cu-Zn-superoxide dismutase family signature 98 120 IPR001424 GO:0006801|GO:0046872
Lsi11g00482 171 PRINTS Cu-Zn-superoxide dismutase family signature 43 65 IPR001424 GO:0006801|GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00828 Lsi11g00482 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01221 Lsi-Chr10:16499663 Lsi11g00482 Lsi-Chr11:5089329 1.32E-58 dispersed
Lsi01g01673 Lsi-Chr1:15271445 Lsi11g00482 Lsi-Chr11:5089329 5.37E-43 transposed
Lsi07g01367 Lsi-Chr7:19864738 Lsi11g00482 Lsi-Chr11:5089329 1.44E-09 transposed
Lsi11g00482 Lsi-Chr11:5089329 Lsi06g00184 Lsi-Chr6:1985233 1.83E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00482 K04565 - csv:101216556 291.967