Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00488 | ATGTTGAGATTCCATGTGGGCGGGAAGGTGGTTGAGAGAGTTGACTTGTTGAGGAAGAAACACTGGGCATGGCGGTTCGATCTGTGGCCATTCGCAATTCTTTATGCGGCCTGGCTTGCCGTTGTTGTTCCCAGTATAGACTTTGGGGATGCTTCCATTGTTTTAGGTGGACTTGCGGCTCTTCATGTTCTGGTCTTGCTTTTCACTGCTTGGTCGGTTGATTTCAAATGTTTTGTCCAGTACAGTCAGGTTAACGATATTTACCGTGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGCTCAAAAGAAATTGTTTCACTTCATTTTCGTAAGCTTCTGGCAGGTTCTGCATCTGCAGTTGATCTTGAGGAGATCTACTTTGATTTCAGAAAACAACGATTTATTTATTCAAAGGAGAAGGAGACTTTCTGCAAGCTTCCTTACCCAACAAAAGAAACTTTTGGTTATTATCTAAAGAATACTGGCTATGGCTCCGAGCCTAAAGTTGTAGCTGCTGTTGAAAAATGGGGGCGCAATATCCTGTTTACCCTGTTTATGCTGTTCATGTTTGAGTCAACCATGGCAAAAAGTCGGTTAAGGACCTTAAGTGAGTTAAGACGTGTTAGAGTGGATACTCAGACCTTAATGGTGCATCGTTGTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCAGGAGATGTTGTCTCCATAGGGCGTGATTCTGGTCAGAGTGGTGAAGACAAATCTGTACCTGCTGATATGCTTATCTTGGCTGGAAGTGCTATTGTTAATGAAGCCATTCTTACTGGGGAGTCTACACCACAATGGAAGGTTTCAATAACTGGGAGAGGAATTGAGGAGAAGTTATCAGCTAAGAGAGACAAAAGTCATGTGTTATTTGGTGGGACCAAAATACTCCAACATACTCCGGATAAGACCTTTCCTCTTAGAACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGCGAACTGGATTTGAAACAAGTCAAGGAAAACTAATGCGCACAATTTTGTTTTCTACAGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCCTATTTATTATGTTCTTAGTTGTATTTGCAGTTATAGCTGCTGGTTATGTACTTGTAAAGGGGTTGGAAGATCCCACGAGAAGCAAGTACAAGCTTTTCCTTAGTTGCTCACTTATAATCACCTCTGTTATTCCTCCTGAACTACCAATGGAACTGTCAATAGCAGTTAATACATCGTTAATTGCTCTAGCACGCCGTGGAATATTTTGTACGGAGCCTTTCCGAATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTCGATAAAACTGGAACATTGACATCAGATGACATGGAGTTTCGAGGAGTAGTTGGGTTGAGTGATAAGGAGGATTTGGAAACTGACATGACTAGTGTGTCTTTGCGGACAGTCGAAATTCTGGCTTCTTGCCATGCATTGGTGTTTGTTGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCTCTCAAGGGAGTTGATTGGATTTACAAATCTGATGAGAAAGCCATTCCCAGAAAGGGAAGTGGCCACACTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCCGAAACCATCCAGGAGAGGCTCACTGATATACCTTCATTTTATGTTGAGACATATAAGAAATATACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTACAAATCACTTCCAGACATGACAGTTAGTGAAGCTAGAGGCCTGGAAAGGGACTTGGTGGAGAGTGACCTGACATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCAGATTCGGCTACAATATTATCTGAGCTTAAAGGATCATCCCATGACTTGGTAATGATTACTGGTGACCAAGCTTTAACAGCGTGCCACGTTGCTAGCCAAGTTCATATTACATCAAAGCAGATTTTAATTCTCAATTCAATGAAGGGAACTGAGGAATATGAATGGCTTTCCCCAGATGAGTCACAGACAGTTCCCTACAGAGAGAAAGAGGTGGCAACTTTATCGGAGACATATGATCTTTGTATTGGAGGTGACTGTATCGCAATGCTACAACGCACCTTTACTGTGGTGGATGTTATTCCATACATTAAGGTTTTTGCAAGAGTTGCTCCTGAGCAGAAAGAACTCATTTTGACCACTTTCAAAACAGTTGGAAGAATGACGTTAATGTGTGGGGATGGAACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTTGGAATTGCTCTCCTAAACGCAGTCCCTCCTCCTCAAAGTGGTAGCTCTTCGTCAGAAGCATCTAAAGATGAGGCTGTACGGTCTGCAAAGTCAAAGAAATCTAAGCCTTCACCTGAATCATCAGGAAAAGCACTTGTAGGTGGAGAAGGTTCTTCAAAAAGCAAAGGTGGTGCAAAACTGGATTCTGCTGCTGAGCAAGCTAGTAACCGTCCACGGACACCTGCAGAGATGCAAAGACAGAAACTAAAGAAACTTATGGATGAGTTAAATGAAGAGGGCGATGGGCGCTCTGCCCCTATTGTCAAGCTTGGAGATGCATCCATGGCATCACCATTCACTGCAAAGCATGCTTCTGTTGCCCCTACTACTGACATTATTCGCCAAGGTCGAAGTACTCTAGTGACAACTCTACAGATGTTTAAAATACTTGGTCTCAACTGCCTCGCTACTGCCTATGTATTGAGTGTTATGTATTTGGATGGTGTAAAGCTTGGCGATATTCAAGCTACTATCAGTGGAGTATTCACAGCAGCCTTTTTTCTCTTCATCTCACATGCGCGGCCCCTTCCAACACTCTCAGCCGAACGCCCTCATCCACACATCTTTTGCTCTTATGTTCTCCTTTCTCTGTTGGGCCAATTTGCAATCCACTTATGTTTCTTGATGTCTTCGGTTAAAGAAGCTGAAAAGCACATGCCTGATGAATGTATAGAGCCAGACTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCATACATGGTAAGCATGATGCTTCAGGTGGCAACCTTTGCTGTAAACTACATGGGTCATCCCTTCAACCAGAGTGTATCCGAAAACAAGCCATTCTTATATGCCCTCTTAGCTGCTGTCGGTTTTTTCACCGTTATTACCTCCGATTTGTTTAGAGATCTCAATGACTGGCTTAAACTGGTTCCATTGCCTGCGGGAATGAGGGATAAGCTTTTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATTTATGTTCCCAGGTAAAATCCCGGCATGGCGGAAGCGACAACGACTGGTGGCTGCTAATCTGGAGAAGAAGAAACAGGTCTGA | 3459 | 43.63 | MLRFHVGGKVVERVDLLRKKHWAWRFDLWPFAILYAAWLAVVVPSIDFGDASIVLGGLAALHVLVLLFTAWSVDFKCFVQYSQVNDIYRADTCKIVPAKFSGSKEIVSLHFRKLLAGSASAVDLEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGYYLKNTGYGSEPKVVAAVEKWGRNILFTLFMLFMFESTMAKSRLRTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRDSGQSGEDKSVPADMLILAGSAIVNEAILTGESTPQWKVSITGRGIEEKLSAKRDKSHVLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFIMFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGLSDKEDLETDMTSVSLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWIYKSDEKAIPRKGSGHTVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKYTRQGSRVLALAYKSLPDMTVSEARGLERDLVESDLTFAGFAVFNCPIRADSATILSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSMKGTEEYEWLSPDESQTVPYREKEVATLSETYDLCIGGDCIAMLQRTFTVVDVIPYIKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGSSSSEASKDEAVRSAKSKKSKPSPESSGKALVGGEGSSKSKGGAKLDSAAEQASNRPRTPAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLCFLMSSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPAGMRDKLLAWALLMFLCCYSWERLLRFMFPGKIPAWRKRQRLVAANLEKKKQV | 1152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5147209 | 5166334 | + | Lsi11G004880.1 | Lsi11g00488 | 673655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00488 | 1152 | PANTHER | CATION-TRANSPORTING ATPASE-RELATED | 1 | 182 | - | - | |
Lsi11g00488 | 1152 | PANTHER | CATION-TRANSPORTING ATPASE-RELATED | 183 | 1146 | - | - | |
Lsi11g00488 | 1152 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 735 | 788 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00488 | 1152 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 362 | 477 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00488 | 1152 | Gene3D | - | 188 | 348 | - | - | |
Lsi11g00488 | 1152 | PRINTS | P-type cation-transporting ATPase superfamily signature | 769 | 788 | - | - | |
Lsi11g00488 | 1152 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 660 | - | - | |
Lsi11g00488 | 1152 | PRINTS | P-type cation-transporting ATPase superfamily signature | 268 | 282 | - | - | |
Lsi11g00488 | 1152 | PRINTS | P-type cation-transporting ATPase superfamily signature | 448 | 462 | - | - | |
Lsi11g00488 | 1152 | SFLD | p-type atpase | 429 | 915 | IPR044492 | - | |
Lsi11g00488 | 1152 | SUPERFAMILY | HAD-like | 443 | 794 | IPR036412 | - | |
Lsi11g00488 | 1152 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 454 | 638 | IPR023299 | GO:0000166 | |
Lsi11g00488 | 1152 | TIGRFAM | P-ATPase-V: P-type ATPase of unknown pump specificity (type V) | 183 | 1109 | IPR006544 | GO:0006812|GO:0016021|GO:0019829|GO:0140358 | |
Lsi11g00488 | 1152 | Gene3D | - | 443 | 628 | IPR023299 | GO:0000166 | |
Lsi11g00488 | 1152 | SFLD | Haloacid Dehalogenase | 429 | 915 | - | - | |
Lsi11g00488 | 1152 | SUPERFAMILY | Calcium ATPase, transduction domain A | 216 | 347 | IPR008250 | - | |
Lsi11g00488 | 1152 | MobiDBLite | consensus disorder prediction | 807 | 821 | - | - | |
Lsi11g00488 | 1152 | PANTHER | CATION-TRANSPORTING ATPASE | 183 | 1146 | - | - | |
Lsi11g00488 | 1152 | PANTHER | CATION-TRANSPORTING ATPASE | 1 | 182 | - | - | |
Lsi11g00488 | 1152 | Coils | Coil | 856 | 876 | - | - | |
Lsi11g00488 | 1152 | Pfam | haloacid dehalogenase-like hydrolase | 445 | 673 | - | - | |
Lsi11g00488 | 1152 | ProSitePatterns | Hypothetical cof family signature 2. | 769 | 791 | - | - | |
Lsi11g00488 | 1152 | Gene3D | - | 629 | 807 | IPR023214 | - | |
Lsi11g00488 | 1152 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 450 | 456 | IPR018303 | - | |
Lsi11g00488 | 1152 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 202 | 1129 | IPR023298 | - | |
Lsi11g00488 | 1152 | Pfam | E1-E2 ATPase | 216 | 428 | - | - | |
Lsi11g00488 | 1152 | MobiDBLite | consensus disorder prediction | 793 | 863 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi11g00488 | Lsi-Chr11:5147209 | Lsi01g00892 | Lsi-Chr1:7182041 | 2.00E-17 | dispersed | |
Lsi11g00488 | Lsi-Chr11:5147209 | Lsi04g01488 | Lsi-Chr4:22556570 | 4.94E-19 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00488 | K14950 | - | csv:101215828 | 2160.19 |