Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00488 ATGTTGAGATTCCATGTGGGCGGGAAGGTGGTTGAGAGAGTTGACTTGTTGAGGAAGAAACACTGGGCATGGCGGTTCGATCTGTGGCCATTCGCAATTCTTTATGCGGCCTGGCTTGCCGTTGTTGTTCCCAGTATAGACTTTGGGGATGCTTCCATTGTTTTAGGTGGACTTGCGGCTCTTCATGTTCTGGTCTTGCTTTTCACTGCTTGGTCGGTTGATTTCAAATGTTTTGTCCAGTACAGTCAGGTTAACGATATTTACCGTGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGCTCAAAAGAAATTGTTTCACTTCATTTTCGTAAGCTTCTGGCAGGTTCTGCATCTGCAGTTGATCTTGAGGAGATCTACTTTGATTTCAGAAAACAACGATTTATTTATTCAAAGGAGAAGGAGACTTTCTGCAAGCTTCCTTACCCAACAAAAGAAACTTTTGGTTATTATCTAAAGAATACTGGCTATGGCTCCGAGCCTAAAGTTGTAGCTGCTGTTGAAAAATGGGGGCGCAATATCCTGTTTACCCTGTTTATGCTGTTCATGTTTGAGTCAACCATGGCAAAAAGTCGGTTAAGGACCTTAAGTGAGTTAAGACGTGTTAGAGTGGATACTCAGACCTTAATGGTGCATCGTTGTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCAGGAGATGTTGTCTCCATAGGGCGTGATTCTGGTCAGAGTGGTGAAGACAAATCTGTACCTGCTGATATGCTTATCTTGGCTGGAAGTGCTATTGTTAATGAAGCCATTCTTACTGGGGAGTCTACACCACAATGGAAGGTTTCAATAACTGGGAGAGGAATTGAGGAGAAGTTATCAGCTAAGAGAGACAAAAGTCATGTGTTATTTGGTGGGACCAAAATACTCCAACATACTCCGGATAAGACCTTTCCTCTTAGAACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGCGAACTGGATTTGAAACAAGTCAAGGAAAACTAATGCGCACAATTTTGTTTTCTACAGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCCTATTTATTATGTTCTTAGTTGTATTTGCAGTTATAGCTGCTGGTTATGTACTTGTAAAGGGGTTGGAAGATCCCACGAGAAGCAAGTACAAGCTTTTCCTTAGTTGCTCACTTATAATCACCTCTGTTATTCCTCCTGAACTACCAATGGAACTGTCAATAGCAGTTAATACATCGTTAATTGCTCTAGCACGCCGTGGAATATTTTGTACGGAGCCTTTCCGAATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTCGATAAAACTGGAACATTGACATCAGATGACATGGAGTTTCGAGGAGTAGTTGGGTTGAGTGATAAGGAGGATTTGGAAACTGACATGACTAGTGTGTCTTTGCGGACAGTCGAAATTCTGGCTTCTTGCCATGCATTGGTGTTTGTTGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCTCTCAAGGGAGTTGATTGGATTTACAAATCTGATGAGAAAGCCATTCCCAGAAAGGGAAGTGGCCACACTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCCGAAACCATCCAGGAGAGGCTCACTGATATACCTTCATTTTATGTTGAGACATATAAGAAATATACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTACAAATCACTTCCAGACATGACAGTTAGTGAAGCTAGAGGCCTGGAAAGGGACTTGGTGGAGAGTGACCTGACATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCAGATTCGGCTACAATATTATCTGAGCTTAAAGGATCATCCCATGACTTGGTAATGATTACTGGTGACCAAGCTTTAACAGCGTGCCACGTTGCTAGCCAAGTTCATATTACATCAAAGCAGATTTTAATTCTCAATTCAATGAAGGGAACTGAGGAATATGAATGGCTTTCCCCAGATGAGTCACAGACAGTTCCCTACAGAGAGAAAGAGGTGGCAACTTTATCGGAGACATATGATCTTTGTATTGGAGGTGACTGTATCGCAATGCTACAACGCACCTTTACTGTGGTGGATGTTATTCCATACATTAAGGTTTTTGCAAGAGTTGCTCCTGAGCAGAAAGAACTCATTTTGACCACTTTCAAAACAGTTGGAAGAATGACGTTAATGTGTGGGGATGGAACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTTGGAATTGCTCTCCTAAACGCAGTCCCTCCTCCTCAAAGTGGTAGCTCTTCGTCAGAAGCATCTAAAGATGAGGCTGTACGGTCTGCAAAGTCAAAGAAATCTAAGCCTTCACCTGAATCATCAGGAAAAGCACTTGTAGGTGGAGAAGGTTCTTCAAAAAGCAAAGGTGGTGCAAAACTGGATTCTGCTGCTGAGCAAGCTAGTAACCGTCCACGGACACCTGCAGAGATGCAAAGACAGAAACTAAAGAAACTTATGGATGAGTTAAATGAAGAGGGCGATGGGCGCTCTGCCCCTATTGTCAAGCTTGGAGATGCATCCATGGCATCACCATTCACTGCAAAGCATGCTTCTGTTGCCCCTACTACTGACATTATTCGCCAAGGTCGAAGTACTCTAGTGACAACTCTACAGATGTTTAAAATACTTGGTCTCAACTGCCTCGCTACTGCCTATGTATTGAGTGTTATGTATTTGGATGGTGTAAAGCTTGGCGATATTCAAGCTACTATCAGTGGAGTATTCACAGCAGCCTTTTTTCTCTTCATCTCACATGCGCGGCCCCTTCCAACACTCTCAGCCGAACGCCCTCATCCACACATCTTTTGCTCTTATGTTCTCCTTTCTCTGTTGGGCCAATTTGCAATCCACTTATGTTTCTTGATGTCTTCGGTTAAAGAAGCTGAAAAGCACATGCCTGATGAATGTATAGAGCCAGACTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCATACATGGTAAGCATGATGCTTCAGGTGGCAACCTTTGCTGTAAACTACATGGGTCATCCCTTCAACCAGAGTGTATCCGAAAACAAGCCATTCTTATATGCCCTCTTAGCTGCTGTCGGTTTTTTCACCGTTATTACCTCCGATTTGTTTAGAGATCTCAATGACTGGCTTAAACTGGTTCCATTGCCTGCGGGAATGAGGGATAAGCTTTTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATTTATGTTCCCAGGTAAAATCCCGGCATGGCGGAAGCGACAACGACTGGTGGCTGCTAATCTGGAGAAGAAGAAACAGGTCTGA 3459 43.63 MLRFHVGGKVVERVDLLRKKHWAWRFDLWPFAILYAAWLAVVVPSIDFGDASIVLGGLAALHVLVLLFTAWSVDFKCFVQYSQVNDIYRADTCKIVPAKFSGSKEIVSLHFRKLLAGSASAVDLEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGYYLKNTGYGSEPKVVAAVEKWGRNILFTLFMLFMFESTMAKSRLRTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRDSGQSGEDKSVPADMLILAGSAIVNEAILTGESTPQWKVSITGRGIEEKLSAKRDKSHVLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFIMFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGLSDKEDLETDMTSVSLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWIYKSDEKAIPRKGSGHTVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKYTRQGSRVLALAYKSLPDMTVSEARGLERDLVESDLTFAGFAVFNCPIRADSATILSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSMKGTEEYEWLSPDESQTVPYREKEVATLSETYDLCIGGDCIAMLQRTFTVVDVIPYIKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGSSSSEASKDEAVRSAKSKKSKPSPESSGKALVGGEGSSKSKGGAKLDSAAEQASNRPRTPAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLCFLMSSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPAGMRDKLLAWALLMFLCCYSWERLLRFMFPGKIPAWRKRQRLVAANLEKKKQV 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5147209 5166334 + Lsi11G004880.1 Lsi11g00488 673655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00488 1152 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 182 - -
Lsi11g00488 1152 PANTHER CATION-TRANSPORTING ATPASE-RELATED 183 1146 - -
Lsi11g00488 1152 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 735 788 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00488 1152 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 362 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00488 1152 Gene3D - 188 348 - -
Lsi11g00488 1152 PRINTS P-type cation-transporting ATPase superfamily signature 769 788 - -
Lsi11g00488 1152 PRINTS P-type cation-transporting ATPase superfamily signature 650 660 - -
Lsi11g00488 1152 PRINTS P-type cation-transporting ATPase superfamily signature 268 282 - -
Lsi11g00488 1152 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Lsi11g00488 1152 SFLD p-type atpase 429 915 IPR044492 -
Lsi11g00488 1152 SUPERFAMILY HAD-like 443 794 IPR036412 -
Lsi11g00488 1152 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 454 638 IPR023299 GO:0000166
Lsi11g00488 1152 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 183 1109 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Lsi11g00488 1152 Gene3D - 443 628 IPR023299 GO:0000166
Lsi11g00488 1152 SFLD Haloacid Dehalogenase 429 915 - -
Lsi11g00488 1152 SUPERFAMILY Calcium ATPase, transduction domain A 216 347 IPR008250 -
Lsi11g00488 1152 MobiDBLite consensus disorder prediction 807 821 - -
Lsi11g00488 1152 PANTHER CATION-TRANSPORTING ATPASE 183 1146 - -
Lsi11g00488 1152 PANTHER CATION-TRANSPORTING ATPASE 1 182 - -
Lsi11g00488 1152 Coils Coil 856 876 - -
Lsi11g00488 1152 Pfam haloacid dehalogenase-like hydrolase 445 673 - -
Lsi11g00488 1152 ProSitePatterns Hypothetical cof family signature 2. 769 791 - -
Lsi11g00488 1152 Gene3D - 629 807 IPR023214 -
Lsi11g00488 1152 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Lsi11g00488 1152 SUPERFAMILY Calcium ATPase, transmembrane domain M 202 1129 IPR023298 -
Lsi11g00488 1152 Pfam E1-E2 ATPase 216 428 - -
Lsi11g00488 1152 MobiDBLite consensus disorder prediction 793 863 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00488 Lsi-Chr11:5147209 Lsi01g00892 Lsi-Chr1:7182041 2.00E-17 dispersed
Lsi11g00488 Lsi-Chr11:5147209 Lsi04g01488 Lsi-Chr4:22556570 4.94E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00488 K14950 - csv:101215828 2160.19