Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00542 | ATGCAAGATATCTTCGGTTCTGTTCGCCGATCATTGGTCTTTCGCCCTCCTCTCGACAATGATGATTCCCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGCAAATCCAGAGTGTTTTCTAGGCATTCCCCTTCCTCCTCCGCTCTCCCTCCCATCCCTAAGGACACTGACCCTCCGATTCGATGGCGCAAAGGCGAATTGATTGGCTGCGGCGCCTTTGGTCGCGTCTATATGGGAATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTCTGATTGCTGCGAATGGCGCTACGAAGGAGAAAGCGCAGGCTCATGTTCAGGAGCTTGAGGAAGAAGTGAAACTTCTGAAGGATCTTTCTCATCCCAATATTGTTAGATACTTGGGCACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCCATATCATCACTTCTAGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAGTATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAGGTTGTTGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACTTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAGCAGTATCAAGAGGTTGCTGCTCTTTTTTATATAGGGACAACAAAGTCTCATCCACCAATACCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTACAGAAGTATGTTTCATTTCTTTGCATTTCTAACCCCGATCTTCAGGAAGCTAATCGTAGCTTTACAATGGAACCAAACTTAAGACCAACTGCCTCTGAACTTTTGAAGCATCCTTTTGTTACTGGGGAGGCAGAATCTCAACTTGTGTCACGCGATGCATGCACGGAGCCCCTGGAAATCCATTCTCCTTTATATACTTCAGAACTTGACATGAGTAAAACTCCAACACTTCCTGAATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAGAGGTATACACTGCAAACAAACTAGAAAGTGATATATGGGGAGGAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAAATCGACTCTTCTATTATGCACGAGAACATGAAGAGTTATAACCCAATTTGCGAGCCCTCCGATGATGAGGATTGCAAATTTGATAGAAGTCCAATAGTAGACCAAGGAAGCAATTTACATGAGGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGTTCTCGATGAGGACCAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTTTATGAGGAGTTCTACAATAGTTTGAATGTATCCTGCTCTCCAGTTTTTATAGAGAGTAAACAAGATGAAAGTACTCCCAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCACTTGATGCTTTTGGCACTGGTAGCCCAGGGAGTGGTAGCAGGGGTAATGCAAATGATCAAAGGTCACAACTCAATGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTACTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTCGATCAAGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCGGGTGTGGGAGGCAAAACTTCGTCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGGACAAGATTTGCATCTCCATTCCGGTAG | 2055 | 43.45 | MQDIFGSVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSALPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGATKEKAQAHVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFYIGTTKSHPPIPEQLSVEAKDFLLKCLQKYVSFLCISNPDLQEANRSFTMEPNLRPTASELLKHPFVTGEAESQLVSRDACTEPLEIHSPLYTSELDMSKTPTLPESSDICNLDSLSCSEVYTANKLESDIWGGNSDDEMCQIDDKDDFMLDEVKIDSSIMHENMKSYNPICEPSDDEDCKFDRSPIVDQGSNLHEEALAPGSCSGVLDEDQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNVSCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGTGSPGSGSRGNANDQRSQLNDWKGLLVDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGVGGKTSSPKDKAMGRPRERTRFASPFR | 684 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5665789 | 5671426 | + | Lsi11G005430.1 | Lsi11g00542 | 673709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00542 | 684 | SMART | serkin_6 | 70 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00542 | 684 | MobiDBLite | consensus disorder prediction | 630 | 655 | - | - | |
Lsi11g00542 | 684 | MobiDBLite | consensus disorder prediction | 45 | 64 | - | - | |
Lsi11g00542 | 684 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 194 | 206 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00542 | 684 | CDD | STKc_MAPKKK | 69 | 353 | - | - | |
Lsi11g00542 | 684 | Pfam | Protein kinase domain | 71 | 315 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00542 | 684 | Gene3D | Transferase(Phosphotransferase) domain 1 | 69 | 379 | - | - | |
Lsi11g00542 | 684 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 336 | 637 | - | - | |
Lsi11g00542 | 684 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 315 | - | - | |
Lsi11g00542 | 684 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 | 336 | 637 | - | - | |
Lsi11g00542 | 684 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 | 1 | 315 | - | - | |
Lsi11g00542 | 684 | Coils | Coil | 103 | 130 | - | - | |
Lsi11g00542 | 684 | MobiDBLite | consensus disorder prediction | 595 | 611 | - | - | |
Lsi11g00542 | 684 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524 | |
Lsi11g00542 | 684 | MobiDBLite | consensus disorder prediction | 560 | 684 | - | - | |
Lsi11g00542 | 684 | MobiDBLite | consensus disorder prediction | 667 | 684 | - | - | |
Lsi11g00542 | 684 | ProSiteProfiles | Protein kinase domain profile. | 70 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00542 | 684 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 354 | IPR011009 | - | |
Lsi11g00542 | 684 | Coils | Coil | 635 | 655 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01341 | Lsi-Chr9:21376951 | Lsi11g00542 | Lsi-Chr11:5665789 | 0 | dispersed | |
Lsi11g00542 | Lsi-Chr11:5665789 | Lsi11g01440 | Lsi-Chr11:22938320 | 4.20E-53 | dispersed | |
Lsi11g00542 | Lsi-Chr11:5665789 | Lsi05g01214 | Lsi-Chr5:20005153 | 1.10E-74 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84028 | PF00069 | Pkinase | 8.20E-65 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00542 | K20606 | - | csv:101209358 | 1184.86 |