Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00542 ATGCAAGATATCTTCGGTTCTGTTCGCCGATCATTGGTCTTTCGCCCTCCTCTCGACAATGATGATTCCCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGCAAATCCAGAGTGTTTTCTAGGCATTCCCCTTCCTCCTCCGCTCTCCCTCCCATCCCTAAGGACACTGACCCTCCGATTCGATGGCGCAAAGGCGAATTGATTGGCTGCGGCGCCTTTGGTCGCGTCTATATGGGAATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTCTGATTGCTGCGAATGGCGCTACGAAGGAGAAAGCGCAGGCTCATGTTCAGGAGCTTGAGGAAGAAGTGAAACTTCTGAAGGATCTTTCTCATCCCAATATTGTTAGATACTTGGGCACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCCATATCATCACTTCTAGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAGTATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGATAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAGGTTGTTGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACTTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAGCAGTATCAAGAGGTTGCTGCTCTTTTTTATATAGGGACAACAAAGTCTCATCCACCAATACCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTACAGAAGTATGTTTCATTTCTTTGCATTTCTAACCCCGATCTTCAGGAAGCTAATCGTAGCTTTACAATGGAACCAAACTTAAGACCAACTGCCTCTGAACTTTTGAAGCATCCTTTTGTTACTGGGGAGGCAGAATCTCAACTTGTGTCACGCGATGCATGCACGGAGCCCCTGGAAATCCATTCTCCTTTATATACTTCAGAACTTGACATGAGTAAAACTCCAACACTTCCTGAATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAGAGGTATACACTGCAAACAAACTAGAAAGTGATATATGGGGAGGAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAAATCGACTCTTCTATTATGCACGAGAACATGAAGAGTTATAACCCAATTTGCGAGCCCTCCGATGATGAGGATTGCAAATTTGATAGAAGTCCAATAGTAGACCAAGGAAGCAATTTACATGAGGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGTTCTCGATGAGGACCAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTTTATGAGGAGTTCTACAATAGTTTGAATGTATCCTGCTCTCCAGTTTTTATAGAGAGTAAACAAGATGAAAGTACTCCCAAATACTTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCACTTGATGCTTTTGGCACTGGTAGCCCAGGGAGTGGTAGCAGGGGTAATGCAAATGATCAAAGGTCACAACTCAATGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTACTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTCGATCAAGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCGGGTGTGGGAGGCAAAACTTCGTCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGGACAAGATTTGCATCTCCATTCCGGTAG 2055 43.45 MQDIFGSVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSALPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGATKEKAQAHVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFYIGTTKSHPPIPEQLSVEAKDFLLKCLQKYVSFLCISNPDLQEANRSFTMEPNLRPTASELLKHPFVTGEAESQLVSRDACTEPLEIHSPLYTSELDMSKTPTLPESSDICNLDSLSCSEVYTANKLESDIWGGNSDDEMCQIDDKDDFMLDEVKIDSSIMHENMKSYNPICEPSDDEDCKFDRSPIVDQGSNLHEEALAPGSCSGVLDEDQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNVSCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGTGSPGSGSRGNANDQRSQLNDWKGLLVDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGVGGKTSSPKDKAMGRPRERTRFASPFR 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5665789 5671426 + Lsi11G005430.1 Lsi11g00542 673709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00542 684 SMART serkin_6 70 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00542 684 MobiDBLite consensus disorder prediction 630 655 - -
Lsi11g00542 684 MobiDBLite consensus disorder prediction 45 64 - -
Lsi11g00542 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lsi11g00542 684 CDD STKc_MAPKKK 69 353 - -
Lsi11g00542 684 Pfam Protein kinase domain 71 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00542 684 Gene3D Transferase(Phosphotransferase) domain 1 69 379 - -
Lsi11g00542 684 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 336 637 - -
Lsi11g00542 684 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 315 - -
Lsi11g00542 684 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 336 637 - -
Lsi11g00542 684 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 315 - -
Lsi11g00542 684 Coils Coil 103 130 - -
Lsi11g00542 684 MobiDBLite consensus disorder prediction 595 611 - -
Lsi11g00542 684 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lsi11g00542 684 MobiDBLite consensus disorder prediction 560 684 - -
Lsi11g00542 684 MobiDBLite consensus disorder prediction 667 684 - -
Lsi11g00542 684 ProSiteProfiles Protein kinase domain profile. 70 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00542 684 SUPERFAMILY Protein kinase-like (PK-like) 69 354 IPR011009 -
Lsi11g00542 684 Coils Coil 635 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01341 Lsi-Chr9:21376951 Lsi11g00542 Lsi-Chr11:5665789 0 dispersed
Lsi11g00542 Lsi-Chr11:5665789 Lsi11g01440 Lsi-Chr11:22938320 4.20E-53 dispersed
Lsi11g00542 Lsi-Chr11:5665789 Lsi05g01214 Lsi-Chr5:20005153 1.10E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84028 PF00069 Pkinase 8.20E-65 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00542 K20606 - csv:101209358 1184.86