Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00608 ATGATATTTTCAGAAGTGGCAGAGCTTAGAACAGTGAGTTGGCTAGAAATTAATGGGAAAATCAGAACCCAAATGCTTTCTTCAAACACAAAATATGGAGCATTTCTTTTGGTGAAGATTTCAGAGAGAGCTTATGGATTGGATTTGATGCCAACTCAAGTTTCTGTTCAATTGGGAAATAACATTATTTCTGAAGCCTCTGTTTGGTTGCAACATAAAGATGAAAAGAAGCAAAATTTGGAGTGTTTGTTTTATGGGAATAGAAGGGAAAGAGCCAGAAGTTTAATGGTGGCTGATCATCAAGAAATTAGGTACTACAGAGCCATCGTCTCCAAAATTCTCACAATCACTCCCCCACTGAGCTCAATCTTCTTCAATTTCATCGAATTCTTCATCAATGGCTACAATTTCCAGCCTCAAATCCTCCATTTCCATCTCCCGTTCGCTTCACATATCTTTCACCACGCCTTCTTTCCCCAATTCAACCAAAACCCTCGAAATTTTCCACTCTCCGAGCTCGCTTCCGACGAGAATCACGCTCAATCACTCTCTGGAATTTGGGACGCCATAACTGGGGGAAACAACCCTCGCGACGCTGTTGCTGCCATTCGACGTGGAATGCTTCTCTTTAGGCAGGGCGATGTTTTGGGGTCTTTAGCAGAATTCGATAAGGCAATTGAATTGGATCCTCGTCAAAAGGCATGTAGGTTCCTACACTTTGCGGCAATGATCTTTGGCAAAGAGGGCTTTCACTTTACTACCTTGATAGGTACCGAGCTTCCCCAATTTTTCTTTTCTGCTACATTTATGATGGGAAGAAATTCAGAAGAGATGCAGAAATGGATTTGTCAAGAATCTCTTTTTAGATTTGAAGAGGGAGCGGAGCAGTTCCGACTAGATGTTGCACAAAATCCAAACGACACAGAAGAGTCTATTTGGTGCTTTCTTTGTGAAGCTCAGTTGTATGGTGTTGATGAAGCAAGAAGGCGATTTCTTCAGGTAGGTAGAGATCCACGGCCGGTCATGAGGGAAGCCTACAACATGTTTAAAGATGGTGGCCATCCGGATAAACTTGTTGCTGCCTTCTCAAGTGGTCGTGAGAATGAGTATTTTTATGCCTGTCTATATGCTGGGCTATATCATGAAGCGGAGAAAAAACTGGATGCAGCTAAACAACATATAATTGCAGCTTGCCAGTCTCCTTATGGACAGAGGTATGAGTCTACAGAATACATAAAGTCCAAAGAAATCCATGCTTTTTGTGCAACCAATTCAATGAATTCAATAAATGGGCAATGCCTCTCCTCTTTTCAGCCAATCCTTTTCACAAAATATAATTGTCCTAAGTTTGAAGCATGTGATTTTGAAGAGGATGGGGGTACAACTCCGTCGGAAGCTGACCCGCCGAAGTTGGCTTCGGCGTCGCACTCGTTCCGGCAATGTGGAGAATCGGCTAGGGTTTTTGAGGAGCTTCCGATTGCTTCCATTGTATCGGTTTCGCGGCCGGATACTGGAGATATCAGTCCCTTGCTGTTATCTTACACCATTGAACTCCAATACAAACAGTTCAAATGGAAATTAGTGAAGAAAGCATCGCAAGTTCTATATTTACATTTTGCATTGAAGAGACGTGCATTTATCGAAGAACTTCACGAGAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGCATAGTAGACCATACAACTGTAGTTCATCATGATGACGAATCTGATGATGGGGCTTTTTCTTTGCATGATGAACAAACTACAAGAAACAGGAATGTTCCTTCTGTTGCTGCTTTACCCATCATTAAACCAGCACTGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAAGGTTACTTAAATCACTTTTTTGGGAACTTGGATATCGTAAATTCTCGTGAGGTCTGCAAATTTTTAGAAGTCTCGAAGATGTCATTTGCAAGAGAACACGGTCCAAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTAAAACAACTCACGGGATCTGATTCTCGAATAAAATGTTTTGCATGTCATTGGTGCAGTTGCTGCGTGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCTATGGACACTAAACTCCTGGATATAATTGTTTTTGATGTGCTACCAACACTAGAAGAAAATGAGGGATCTCAAGCATGCTTAGCATATCAAGTCAAGGAGCGCAATCCTTTACAATGTTGTGAAAAGGTTAGATGCGGAGATGGGGACATGAGGTTCAGAACCACAAGTACCGCCAAAATCAAAGAATGGGTCTCATCAATTAATGATGCTGGTTTTGGATCCAAAGATGGCTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTCAGAGAGGTTTGAGTGATGATGAAACCCAAGCTCAGTGGTTCATAGATGGTCGGGCAGCTTTTGAAGCAATCACTTGCTCTATTGAGGCTGCAAAATCTGAGATATTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTATATGCGACGTCCTTTTCACAATCATTCTTCATCACGGCTTGATGCATTGCTGGAAACAAAAGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTATAAGGAGGTTCCTATTGCTCTGAAAATTAACAGTATGTATAGTAAGAAGAGGCTTGTAAATATTCATGAGAATATTAAGCCTCTGTTTTTAAACAATTCATCACCTGTTCCATGGCATAATGACAGGTCACATCACGAAAAAATTGTTATCATTGATCACCACATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGCCGCTATGATACAATGGAACATAAAGAAACTTCTGATTATCATAGATTTGCCCACTTTGCTTGTGTTAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAAAGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCATGGCATGATGTTCACTGTGCTCTTTGGGGGTCTCCATGCCGTGATATTGCTCGACATTTTGTTCAGAGGTGGAACCATGCCAAGAGAAACAAAGCCCCAAATGAAGAAAAAATACCTCTACTTATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAGAAGCACGGAGTTGAGCTTCAAAAGTAAAGACTCAGAGCAAGATCATCAGAAGACCACAGATGATTTCTTTTCCTCCTTATCACCACAGGAAGATATTCCATTACTGATGCCTCAGGAAATTGGTGGACTTCCAGATTCTAACGTGCAAACAAATAGTCTTTCCATGAATCACAATTTTTGCAATCAATCCATGGAGATACGAAGTAGTGTTATGGATTCTTTCCAGGCATACAATGTTGAATCATTGACCCAATTTGAACAAACAAATGGATTGTTTGATGAATTTGGATTTTTGGATGAGTTTGGTGCTTTTGGTCATCTGAGGGAAGCTACCATTGATACTTCACCAGATATGAAAACTTCAAATGATTGGTTGGAAACTGAACACGAAAGTAACTATGTTGTTGCTATAAACGAGGTCAAAGAAATTGGCCCTCTTACTTCTAGCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACAAGCAAACCAGAAGCAAGTATTCATGCTGCTTATTGTTCTGCCATTCAAGAGGCAAAACACTTCATCTACATTGAGAACCAGTTTTTTATATCAGGTTTATCAGGGGATGAGACCATACAAAATCGGGTTCTGGATGCACTATACCAACGTATATGGCTAGCTCATAAAGAAAAACAATGTTTTAGAGTTATTGTTGTTTTACCACTCTTACCTGGATTTCAGTCTTTCTATGGCTGGCTTCATAAACTATATGCTCCCTGTTCCTTTTGCATCCATCAGGGTGGTGTAGATGATAATGGTGCAGCAACTGTTCGAGCCTTGATGCATTGGCAATATCGAACAATTAGTTGGGAAAAAACTTCGATACTGTACCGTCTCAATCTTTTATTGGGTCCTAAAACACAAGATTATATTTTGTTTTGTGGCCTTCGATCATATGGCAGATTATTTGATGGTGGTCCAATTGCCACAAGTCAGGTATATGTGCACAGCAAATTGATGATAATCGATGATTGTATTACCTTTATAGGTTCCTCCAATATTAATGATAGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTCATTATTGAGGATAAAGAGTTTGTTGATTCATCTATGAATGGAAAACCTTGGAAAGCTGGAAAATTTGCTCATAGTCTACGATGCTCCTTGTGGTGTGAGCACCTCGGTCTTCATCTCGGAGAGGTCAGTCAAATCCTTGATCCTATAGTAGAAGCAACGTATAAAGATTTATGGTTAGCAACGGCAAAGGGAAACACAACAATATATGAAGATGTCTTTTCTTGTATCCCCAATGACAACATAAACTCAAGATCATCTTTACGCCAAAGTTTGGCAGATTTGAAGGGCAAACTTGATCAAAACACATTAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGCTATGAGAATGGGGAAGTAAAGATGATAGATCCAATGGAGAGACTGAAGTTTATTAGAGGACATCTTGTCTGTTTTCCATTGAAGTTCTTGTGGCAAGAAGATCTCAGACCAGGTTTCATTGAGAGTGAGTTTTATGCTGCCCCTCATAGGCGCGCATCAGGGGTTGGATTCAAAAGCATTGAATTAAGAGGATTGTACTGGATGGCATCGGCTGCAATAAAATCAGGGGCTTTGGTTTCACTGAAAGACCTGATGAAGCCATCTTCTGAGTTCTTCAAGGATGGGGCTTCACTTAGAGTTACTGGAAAATTAGTGGAGTATTCTGTAGAGACAGCCATTGCCATAATTGTTGATGGAAATGTTAACTTGAAGATCGACACACAGCATCTGAGAGAACTTAGCATTCGCATTGGCTCCATATATCAATTTATTGGTGAACTACTTGTTCAGTCAGATAATGAGGCAACTCTGCAGGCACGTGTTGGCAGGAATGTTGATGGCATTGACCTCAACCTTTATCATCAGGCCCTGCAGCTGTTAAGACAATTTCAAGCTGATCACTTGAACAAGAGGACAAATTAG 5157 40.88 MIFSEVAELRTVSWLEINGKIRTQMLSSNTKYGAFLLVKISERAYGLDLMPTQVSVQLGNNIISEASVWLQHKDEKKQNLECLFYGNRRERARSLMVADHQEIRYYRAIVSKILTITPPLSSIFFNFIEFFINGYNFQPQILHFHLPFASHIFHHAFFPQFNQNPRNFPLSELASDENHAQSLSGIWDAITGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKACRFLHFAAMIFGKEGFHFTTLIGTELPQFFFSATFMMGRNSEEMQKWICQESLFRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLQVGRDPRPVMREAYNMFKDGGHPDKLVAAFSSGRENEYFYACLYAGLYHEAEKKLDAAKQHIIAACQSPYGQRYESTEYIKSKEIHAFCATNSMNSINGQCLSSFQPILFTKYNCPKFEACDFEEDGGTTPSEADPPKLASASHSFRQCGESARVFEELPIASIVSVSRPDTGDISPLLLSYTIELQYKQFKWKLVKKASQVLYLHFALKRRAFIEELHEKQEQVKEWLHNLGIVDHTTVVHHDDESDDGAFSLHDEQTTRNRNVPSVAALPIIKPALGGQRSISDKAKLAMQGYLNHFFGNLDIVNSREVCKFLEVSKMSFAREHGPKLKEGYLMVKHLKQLTGSDSRIKCFACHWCSCCVYNWKKVWAVLKPGFLALVADPMDTKLLDIIVFDVLPTLEENEGSQACLAYQVKERNPLQCCEKVRCGDGDMRFRTTSTAKIKEWVSSINDAGFGSKDGWCHPHRFGSFAPQRGLSDDETQAQWFIDGRAAFEAITCSIEAAKSEIFITGWWLCPELYMRRPFHNHSSSRLDALLETKAKEGVKIYILMYKEVPIALKINSMYSKKRLVNIHENIKPLFLNNSSPVPWHNDRSHHEKIVIIDHHICFIGGLDLCFGRYDTMEHKETSDYHRFAHFACVRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLMPQHDMVLPHYMGRSTELSFKSKDSEQDHQKTTDDFFSSLSPQEDIPLLMPQEIGGLPDSNVQTNSLSMNHNFCNQSMEIRSSVMDSFQAYNVESLTQFEQTNGLFDEFGFLDEFGAFGHLREATIDTSPDMKTSNDWLETEHESNYVVAINEVKEIGPLTSSNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIQNRVLDALYQRIWLAHKEKQCFRVIVVLPLLPGFQSFYGWLHKLYAPCSFCIHQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGPKTQDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQILDPIVEATYKDLWLATAKGNTTIYEDVFSCIPNDNINSRSSLRQSLADLKGKLDQNTLDLGIAAEKIESYENGEVKMIDPMERLKFIRGHLVCFPLKFLWQEDLRPGFIESEFYAAPHRRASGVGFKSIELRGLYWMASAAIKSGALVSLKDLMKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVNLKIDTQHLRELSIRIGSIYQFIGELLVQSDNEATLQARVGRNVDGIDLNLYHQALQLLRQFQADHLNKRTN 1718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6426637 6454040 + Lsi11G006080.1 Lsi11g00608 673775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00608 1718 Pfam Telomere-capping, CST complex subunit 1598 1711 IPR029146 GO:0003697|GO:1990879
Lsi11g00608 1718 SUPERFAMILY PH domain-like 661 785 - -
Lsi11g00608 1718 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 923 950 IPR001736 GO:0003824
Lsi11g00608 1718 SMART pld_4 923 950 IPR001736 GO:0003824
Lsi11g00608 1718 SMART pld_4 1373 1400 IPR001736 GO:0003824
Lsi11g00608 1718 Pfam Phospholipase D Active site motif 923 950 IPR001736 GO:0003824
Lsi11g00608 1718 SUPERFAMILY TPR-like 195 329 IPR011990 GO:0005515
Lsi11g00608 1718 CDD PH_PLD 638 785 - -
Lsi11g00608 1718 Gene3D - 1599 1714 IPR012340 -
Lsi11g00608 1718 SUPERFAMILY Phospholipase D/nuclease 1196 1421 - -
Lsi11g00608 1718 CDD PLDc_vPLD1_2_yPLD_like_2 1214 1417 - -
Lsi11g00608 1718 MobiDBLite consensus disorder prediction 1056 1070 - -
Lsi11g00608 1718 Pfam Phloem protein 2 3 73 IPR025886 -
Lsi11g00608 1718 Pfam PLD-like domain 1230 1420 IPR025202 -
Lsi11g00608 1718 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1373 1400 IPR001736 GO:0003824
Lsi11g00608 1718 PANTHER PHOSPHOLIPASE D 476 1290 IPR015679 -
Lsi11g00608 1718 SUPERFAMILY Phospholipase D/nuclease 789 1040 - -
Lsi11g00608 1718 PANTHER PHOSPHOLIPASE D ZETA 2 476 1290 - -
Lsi11g00608 1718 PANTHER PHOSPHOLIPASE D ZETA 2 1307 1574 - -
Lsi11g00608 1718 Gene3D Endonuclease Chain A 807 1058 - -
Lsi11g00608 1718 MobiDBLite consensus disorder prediction 1056 1077 - -
Lsi11g00608 1718 Gene3D - 659 787 IPR011993 -
Lsi11g00608 1718 Gene3D Endonuclease Chain A 1163 1434 - -
Lsi11g00608 1718 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Lsi11g00608 1718 PANTHER PHOSPHOLIPASE D 1307 1574 IPR015679 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00725 Lsi-Chr9:8355604 Lsi11g00608 Lsi-Chr11:6426637 6.52E-36 dispersed
Lsi09g01919 Lsi-Chr9:28031240 Lsi11g00608 Lsi-Chr11:6426637 3.62E-14 dispersed
Lsi11g00608 Lsi-Chr11:6426637 Lsi09g01456 Lsi-Chr9:22538285 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00608 K01115 - csv:101220522 1997.63