Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00609 ATGGGGCATTTCTCCACCATGTTCAATGGGCTGGCAAGGTCATTTTCATTCAAGAAAGTTAGAAATTCTGGGAGTCTAGGCGACGAGGGAGGGCGAGAAGCTGCGAAAGCCATGATAAAGGATGCAAAAAGGAAAGACTCAATACTATGCACCTCCGGTGTCCTCAATGCAGAAGGTTCCGATACTTTTGCTTCGGTGTTCTCAAAGAAAGGCGAAAAAGGAGTAAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTCGATGGGCACGGACCGTGGGGTCACTTTGTTGCAAAGACGGTAAGAGAATCATTGCCGCCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTGTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAGCGATTTGATATATGGAAGCATTCTTATTTAAGAACTTGTGCTGCCATCGATCATGAACTCGAGCAGCACCGTAAAATCGATACATTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTAGTTGTTTTGGCCAACGTAGGTGACTCCCGAGCAGTTTTAGCTACTACTTCAGACGATGGAAGTATAGTACCGGTTCAGCTCACCGTTGATTTCAAACCGAACCTACCTCAGGAGGCCGAGCGGATAATTCAATGCAATGGGAGGGTGTTTTGTTTAAGTGACGAGCCAGGAGTTCATAGGGTCTGGCTTCCCAATGAGGAATCACCAGGATTGGCGATGTCGAGAGCCTTCGGTGATTACTGTATAAAAGAATACGGACTCATTTCCGTGCCAGAAGTGACACATAGAAGTATAACCAGCAGAGACCAATTCATTATATTGGCCACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTGGAGATTGTATCGTCAACACCGGATAGAGCAAAATCGTCGAAACGTCTGGTCGAGTGTGCGGTTCGAGCATGGAAACAGAAGAGACGAGGCATTGCAATGGATGATATATCAGCTATTTGCCTCTTCTTCCACTCCTCATCAGATCAAGATGATCACCTTGTATCCACACTATAG 1104 45.74 MGHFSTMFNGLARSFSFKKVRNSGSLGDEGGREAAKAMIKDAKRKDSILCTSGVLNAEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFVDPELDSEKKHQRFDIWKHSYLRTCAAIDHELEQHRKIDTFYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSIVPVQLTVDFKPNLPQEAERIIQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKEYGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPDRAKSSKRLVECAVRAWKQKRRGIAMDDISAICLFFHSSSDQDDHLVSTL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6480557 6484924 + Lsi11G006090.1 Lsi11g00609 673776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00609 367 PANTHER ALPHABET, ISOFORM E-RELATED 1 362 - -
Lsi11g00609 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Lsi11g00609 367 Pfam Protein phosphatase 2C 87 325 IPR001932 -
Lsi11g00609 367 SUPERFAMILY PP2C-like 59 354 IPR036457 -
Lsi11g00609 367 SMART PP2C_4 52 351 IPR001932 -
Lsi11g00609 367 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 362 - -
Lsi11g00609 367 CDD PP2Cc 63 353 IPR001932 -
Lsi11g00609 367 Gene3D - 50 356 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00876 Lsi-Chr10:12985503 Lsi11g00609 Lsi-Chr11:6480557 2.21E-100 dispersed
Lsi11g00609 Lsi-Chr11:6480557 Lsi11g00963 Lsi-Chr11:15029915 1.17E-117 dispersed
Lsi11g00609 Lsi-Chr11:6480557 Lsi06g00069 Lsi-Chr6:607397 3.05E-174 wgd
Lsi11g00609 Lsi-Chr11:6480557 Lsi09g01457 Lsi-Chr9:22554869 1.10E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00609 - - csv:101208725 716.457