Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00612 | ATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGATTCCTACCAGCTCTTCGCCCGTCTCTGCATCGCCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTGGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGATGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCGTTTGGAGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACGCAGGATATAACTAATTTAATCAAGAAATCAGAGAAAGGGCTCAAGAGACTCTCTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGGTCAAGATGAGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTATTTAATGAGCATCAGATGGCCAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAACGAGAGAGAGAGATCCAACAAGTTATAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATTGATAGAATAGATTACAATATTCAAAATGTTGCGACAACCGTTGATGAGGGCCTTAAGCAACTGCAGAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGTGCGTCCGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTTTTGATCCTTAAAACCATACTGTTTTGA | 990 | 44.75 | MASRNRTLLFRKYRDALRSVRIPTSSSPVSASPSTSSAAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDEIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVIESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6525802 | 6529729 | + | Lsi11G006120.1 | Lsi11g00612 | 673779 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00612 | 329 | SUPERFAMILY | t-snare proteins | 78 | 288 | IPR010989 | GO:0016020|GO:0016192 | |
Lsi11g00612 | 329 | PANTHER | SYNTAXIN | 1 | 324 | IPR045242 | - | |
Lsi11g00612 | 329 | SMART | tSNARE_6 | 228 | 295 | IPR000727 | - | |
Lsi11g00612 | 329 | Coils | Coil | 184 | 204 | - | - | |
Lsi11g00612 | 329 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 233 | 295 | IPR000727 | - | |
Lsi11g00612 | 329 | Gene3D | - | 79 | 287 | - | - | |
Lsi11g00612 | 329 | PANTHER | TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 324 | - | - | |
Lsi11g00612 | 329 | CDD | SNARE_syntaxin16 | 237 | 294 | - | - | |
Lsi11g00612 | 329 | Pfam | SNARE domain | 269 | 321 | IPR000727 | - | |
Lsi11g00612 | 329 | SMART | SynN_4 | 73 | 188 | IPR006011 | GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02441 | Lsi-Chr2:30967984 | Lsi11g00612 | Lsi-Chr11:6525802 | 2.20E-121 | dispersed | |
Lsi07g01177 | Lsi-Chr7:17275748 | Lsi11g00612 | Lsi-Chr11:6525802 | 4.20E-10 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00612 | K08489 | - | csv:101207998 | 595.89 |