Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00612 ATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGATTCCTACCAGCTCTTCGCCCGTCTCTGCATCGCCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTGGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGATGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCGTTTGGAGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACGCAGGATATAACTAATTTAATCAAGAAATCAGAGAAAGGGCTCAAGAGACTCTCTGTAGCTGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGGTCAAGATGAGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTATTTAATGAGCATCAGATGGCCAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAACGAGAGAGAGAGATCCAACAAGTTATAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATTGATAGAATAGATTACAATATTCAAAATGTTGCGACAACCGTTGATGAGGGCCTTAAGCAACTGCAGAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGTGCGTCCGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTTTTGATCCTTAAAACCATACTGTTTTGA 990 44.75 MASRNRTLLFRKYRDALRSVRIPTSSSPVSASPSTSSAAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDEIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVIESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6525802 6529729 + Lsi11G006120.1 Lsi11g00612 673779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00612 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Lsi11g00612 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Lsi11g00612 329 SMART tSNARE_6 228 295 IPR000727 -
Lsi11g00612 329 Coils Coil 184 204 - -
Lsi11g00612 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Lsi11g00612 329 Gene3D - 79 287 - -
Lsi11g00612 329 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 324 - -
Lsi11g00612 329 CDD SNARE_syntaxin16 237 294 - -
Lsi11g00612 329 Pfam SNARE domain 269 321 IPR000727 -
Lsi11g00612 329 SMART SynN_4 73 188 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02441 Lsi-Chr2:30967984 Lsi11g00612 Lsi-Chr11:6525802 2.20E-121 dispersed
Lsi07g01177 Lsi-Chr7:17275748 Lsi11g00612 Lsi-Chr11:6525802 4.20E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00612 K08489 - csv:101207998 595.89