Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g00619 | ATGGCTCATACCAGCAATACTGCAGCTGGAGTCGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCCCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCAGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTTTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTTTGGAACAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGTGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTTCGTTCATCCAAGAAGTGA | 603 | 44.61 | MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK | 200 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 6598105 | 6601285 | + | Lsi11G006190.1 | Lsi11g00619 | 673786 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g00619 | 200 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 126 | IPR036236 | - | |
| Lsi11g00619 | 200 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676|GO:0008270 | |
| Lsi11g00619 | 200 | MobiDBLite | consensus disorder prediction | 134 | 181 | - | - | |
| Lsi11g00619 | 200 | MobiDBLite | consensus disorder prediction | 27 | 52 | - | - | |
| Lsi11g00619 | 200 | Coils | Coil | 142 | 179 | - | - | |
| Lsi11g00619 | 200 | Coils | Coil | 22 | 42 | - | - | |
| Lsi11g00619 | 200 | Gene3D | Classic Zinc Finger | 78 | 116 | - | - | |
| Lsi11g00619 | 200 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | - | - | |
| Lsi11g00619 | 200 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 7 | 200 | IPR040107 | GO:0000398|GO:0005681 | |
| Lsi11g00619 | 200 | MobiDBLite | consensus disorder prediction | 134 | 200 | - | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26156 | PF12171 | zf-C2H2_jaz | 1.80E-06 | CL0361 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g00619 | K12848 | - | csv:101206387 | 317.775 |