Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00619 ATGGCTCATACCAGCAATACTGCAGCTGGAGTCGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCCCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCAGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTTTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTTTGGAACAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGTGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTTCGTTCATCCAAGAAGTGA 603 44.61 MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK 200
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 6598105 6601285 + Lsi11G006190.1 Lsi11g00619 673786
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00619 200 SUPERFAMILY beta-beta-alpha zinc fingers 79 126 IPR036236 -
Lsi11g00619 200 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676|GO:0008270
Lsi11g00619 200 MobiDBLite consensus disorder prediction 134 181 - -
Lsi11g00619 200 MobiDBLite consensus disorder prediction 27 52 - -
Lsi11g00619 200 Coils Coil 142 179 - -
Lsi11g00619 200 Coils Coil 22 42 - -
Lsi11g00619 200 Gene3D Classic Zinc Finger 78 116 - -
Lsi11g00619 200 Pfam Zinc-finger of C2H2 type 84 108 - -
Lsi11g00619 200 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 7 200 IPR040107 GO:0000398|GO:0005681
Lsi11g00619 200 MobiDBLite consensus disorder prediction 134 200 - -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26156 PF12171 zf-C2H2_jaz 1.80E-06 CL0361 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00619 K12848 - csv:101206387 317.775