Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g00633 | ATGTGTTGCCAAGGTCTTCTTTTGGTTCAAAAAATCTCTGAACTTTACCACAAAATCTCCACTCTTGAAAGCCTCAAGCCCTCTAAAGATGTCAACTCTCTCTTCTCTCAACTAGTCCTCATTTGCACCCCTCCCCCGTCTTCTCCGTCGTCCATCGACATCTCGACGCTCTGCTCCACTGTCCAAACCATGAGATCCCATCTCATCAAGCTTTGCGGCGAAGCCGAGGCCCTTCTCGAGCATCACTACTCCACCATTTTAGCTTCTCACCAAAACCCACTTGACCATCTCTCCCTTTTCCCTTATTACTCCAACTACCTCAAACTAACCCACCTTGAATTCTCCATTTTGAACCACCACGCGCCCCACGCGCCACCCTCCAAGGTGGCCTTTGTTGGCTCTGGTGCACTTCCATTCTCGTCGATCATCATGGCCTTGAAGTACCTCCCGAAAGCCGAGTTTCACAACTTCGACGTCGACTCGTCTGCTAATGCCAAAGCAGCGATGCTGGTAGCTGGCGACGCAGACCTGTCGAGGCGGATGGTGTTCCACACGACCGACATCATGGACGTTGCCTCGAATGAGTTGAGGCAGTTTCAGGTGGTGTTTTTGGCGGCCTTGGTGGGGATGGAAAAGGAAGAGAAGGTGAAGGTGATTGAGCATTTGAGGAAGAACATGGGTGGTGGCGCGTTGTTGATGTTGAGGAGCGCATATGGTGCACGCGCGTTTCTTTATCCGGTGGTTGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTTACGGTGTTTCATCCCACGGATGAAGTTATTAATTCAATTGTATTGGCACGATTATAA | 834 | 50.12 | MCCQGLLLVQKISELYHKISTLESLKPSKDVNSLFSQLVLICTPPPSSPSSIDISTLCSTVQTMRSHLIKLCGEAEALLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILNHHAPHAPPSKVAFVGSGALPFSSIIMALKYLPKAEFHNFDVDSSANAKAAMLVAGDADLSRRMVFHTTDIMDVASNELRQFQVVFLAALVGMEKEEKVKVIEHLRKNMGGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 6689014 | 6689847 | + | Lsi11G006330.1 | Lsi11g00633 | 673800 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g00633 | 277 | PANTHER | SYNTHASE, PUTATIVE-RELATED | 1 | 276 | - | - | |
| Lsi11g00633 | 277 | Gene3D | Vaccinia Virus protein VP39 | 4 | 277 | IPR029063 | - | |
| Lsi11g00633 | 277 | PANTHER | NICOTIANAMINE SYNTHASE 3 | 1 | 276 | IPR004298 | GO:0030410|GO:0030418 | |
| Lsi11g00633 | 277 | ProSiteProfiles | Nicotianamine synthase (NAS)-like family profile. | 1 | 277 | IPR004298 | GO:0030410|GO:0030418 | |
| Lsi11g00633 | 277 | Pfam | Nicotianamine synthase protein | 7 | 276 | IPR004298 | GO:0030410|GO:0030418 | |
| Lsi11g00633 | 277 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 100 | 237 | IPR029063 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi06g00055 | Lsi11g00633 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g01131 | Lsi-Chr6:21563174 | Lsi11g00633 | Lsi-Chr11:6689014 | 6.64E-98 | dispersed | |
| Lsi11g00633 | Lsi-Chr11:6689014 | Lsi11g00635 | Lsi-Chr11:6701708 | 8.53E-46 | proximal | |
| Lsi11g00633 | Lsi-Chr11:6689014 | Lsi11g00634 | Lsi-Chr11:6700569 | 6.23E-49 | tandem | |
| Lsi11g00633 | Lsi-Chr11:6689014 | Lsi06g00055 | Lsi-Chr6:447411 | 6.06E-110 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g00633 | K05953 | - | csv:101219339 | 484.567 |