Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00633 ATGTGTTGCCAAGGTCTTCTTTTGGTTCAAAAAATCTCTGAACTTTACCACAAAATCTCCACTCTTGAAAGCCTCAAGCCCTCTAAAGATGTCAACTCTCTCTTCTCTCAACTAGTCCTCATTTGCACCCCTCCCCCGTCTTCTCCGTCGTCCATCGACATCTCGACGCTCTGCTCCACTGTCCAAACCATGAGATCCCATCTCATCAAGCTTTGCGGCGAAGCCGAGGCCCTTCTCGAGCATCACTACTCCACCATTTTAGCTTCTCACCAAAACCCACTTGACCATCTCTCCCTTTTCCCTTATTACTCCAACTACCTCAAACTAACCCACCTTGAATTCTCCATTTTGAACCACCACGCGCCCCACGCGCCACCCTCCAAGGTGGCCTTTGTTGGCTCTGGTGCACTTCCATTCTCGTCGATCATCATGGCCTTGAAGTACCTCCCGAAAGCCGAGTTTCACAACTTCGACGTCGACTCGTCTGCTAATGCCAAAGCAGCGATGCTGGTAGCTGGCGACGCAGACCTGTCGAGGCGGATGGTGTTCCACACGACCGACATCATGGACGTTGCCTCGAATGAGTTGAGGCAGTTTCAGGTGGTGTTTTTGGCGGCCTTGGTGGGGATGGAAAAGGAAGAGAAGGTGAAGGTGATTGAGCATTTGAGGAAGAACATGGGTGGTGGCGCGTTGTTGATGTTGAGGAGCGCATATGGTGCACGCGCGTTTCTTTATCCGGTGGTTGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTTACGGTGTTTCATCCCACGGATGAAGTTATTAATTCAATTGTATTGGCACGATTATAA 834 50.12 MCCQGLLLVQKISELYHKISTLESLKPSKDVNSLFSQLVLICTPPPSSPSSIDISTLCSTVQTMRSHLIKLCGEAEALLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILNHHAPHAPPSKVAFVGSGALPFSSIIMALKYLPKAEFHNFDVDSSANAKAAMLVAGDADLSRRMVFHTTDIMDVASNELRQFQVVFLAALVGMEKEEKVKVIEHLRKNMGGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL 277
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 6689014 6689847 + Lsi11G006330.1 Lsi11g00633 673800
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00633 277 PANTHER SYNTHASE, PUTATIVE-RELATED 1 276 - -
Lsi11g00633 277 Gene3D Vaccinia Virus protein VP39 4 277 IPR029063 -
Lsi11g00633 277 PANTHER NICOTIANAMINE SYNTHASE 3 1 276 IPR004298 GO:0030410|GO:0030418
Lsi11g00633 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410|GO:0030418
Lsi11g00633 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410|GO:0030418
Lsi11g00633 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 100 237 IPR029063 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi06g00055 Lsi11g00633 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01131 Lsi-Chr6:21563174 Lsi11g00633 Lsi-Chr11:6689014 6.64E-98 dispersed
Lsi11g00633 Lsi-Chr11:6689014 Lsi11g00635 Lsi-Chr11:6701708 8.53E-46 proximal
Lsi11g00633 Lsi-Chr11:6689014 Lsi11g00634 Lsi-Chr11:6700569 6.23E-49 tandem
Lsi11g00633 Lsi-Chr11:6689014 Lsi06g00055 Lsi-Chr6:447411 6.06E-110 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00633 K05953 - csv:101219339 484.567