Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00634 ATGGAATTTGAAGAAGCCCCTCTCTTGCAAAAAGTTTGTGCTCTTTACCATGAAATCTCAAGCCTCACTAGCCTTAAGCCTTCAAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCTCCGCCTGCCCCTGGCCTTGATATTGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGGACTCATCTCATTCGTCTTTGTGCTAAAGCTGAGGCTCTTCTTGAACTTCATTTCTCTTCCATTTTGGCTTCTTCTTTTCATAATCCTATTTCTAATTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTTTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTGTCGTCGTATTCCTGCTACCGTCGCGTTCGTTGGCTCCGGTCCCCTCCCGCTCTCCTCCATTGTCATGGCGTCCATTCATCTTAAGGGTAACCGTTGTTGA 456 44.52 MEFEEAPLLQKVCALYHEISSLTSLKPSKNVDTLFTQLVLTCSPPAPGLDIASLSQPLQAMRTHLIRLCAKAEALLELHFSSILASSFHNPISNLSIFPYYSNYLKLSLLEFDILRSHCRRIPATVAFVGSGPLPLSSIVMASIHLKGNRC 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6700569 6701024 + Lsi11G006340.1 Lsi11g00634 673801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00634 151 Gene3D Vaccinia Virus protein VP39 9 151 IPR029063 -
Lsi11g00634 151 Pfam Nicotianamine synthase protein 5 147 IPR004298 GO:0030410|GO:0030418
Lsi11g00634 151 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 151 IPR004298 GO:0030410|GO:0030418
Lsi11g00634 151 PANTHER NICOTIANAMINE SYNTHASE 3 4 148 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00055 Lsi-Chr6:447411 Lsi11g00634 Lsi-Chr11:6700569 4.89E-56 dispersed
Lsi11g00633 Lsi-Chr11:6689014 Lsi11g00634 Lsi-Chr11:6700569 6.23E-49 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00634 K05953 - csv:101203651 243.432