Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00635 ATGGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTTCACACAACAGATGTAATGGAAGTAACAAAGGGATTAAAAGATTATGAAGTAGTTTTCTTAGCAGCATTGGTTGGATTGGAAGAGGAAGAAAAAGGCAGAGTTTTGAAGCATTTGGGGAAGCATATGGCAGCTGGTGCTTATTTGATGCTAAGAAGTGCGCATGGAGCTAGAGCATTTTTATACCCTGTTGTTGATATTTGTAATGTTGAAGCTTCTGGATTTGAGATTTTATCTGTGTTTCATCCCACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGGAAGAAAGTAGTGTTTGATCGAAACACGGTCGACGAGAACGACGAGAAGCGAGGTATTTTAGTTAATACCTCCTCTATTGTGTTGGCTGAGAAATGCTCTGGGTTTAATGGCTTTAGTCCCATGATTGAAGAGCAACTTTCTTGA 480 38.75 MASQLVCSDPDLSQRMIFHTTDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLKHLGKHMAAGAYLMLRSAHGARAFLYPVVDICNVEASGFEILSVFHPTDEVINSVVIARKKVVFDRNTVDENDEKRGILVNTSSIVLAEKCSGFNGFSPMIEEQLS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6701708 6702187 + Lsi11G006350.1 Lsi11g00635 673802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00635 159 Gene3D Vaccinia Virus protein VP39 1 115 IPR029063 -
Lsi11g00635 159 PANTHER NICOTIANAMINE SYNTHASE 3 1 121 IPR004298 GO:0030410|GO:0030418
Lsi11g00635 159 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 118 IPR004298 GO:0030410|GO:0030418
Lsi11g00635 159 Pfam Nicotianamine synthase protein 2 115 IPR004298 GO:0030410|GO:0030418
Lsi11g00635 159 PANTHER NICOTIANAMINE SYNTHASE, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00633 Lsi-Chr11:6689014 Lsi11g00635 Lsi-Chr11:6701708 8.53E-46 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00635 K05953 - csv:101203651 281.567