Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00635 ATGGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTTCACACAACAGATGTAATGGAAGTAACAAAGGGATTAAAAGATTATGAAGTAGTTTTCTTAGCAGCATTGGTTGGATTGGAAGAGGAAGAAAAAGGCAGAGTTTTGAAGCATTTGGGGAAGCATATGGCAGCTGGTGCTTATTTGATGCTAAGAAGTGCGCATGGAGCTAGAGCATTTTTATACCCTGTTGTTGATATTTGTAATGTTGAAGCTTCTGGATTTGAGATTTTATCTGTGTTTCATCCCACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGGAAGAAAGTAGTGTTTGATCGAAACACGGTCGACGAGAACGACGAGAAGCGAGGTATTTTAGTTAATACCTCCTCTATTGTGTTGGCTGAGAAATGCTCTGGGTTTAATGGCTTTAGTCCCATGATTGAAGAGCAACTTTCTTGA 480 38.75 MASQLVCSDPDLSQRMIFHTTDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLKHLGKHMAAGAYLMLRSAHGARAFLYPVVDICNVEASGFEILSVFHPTDEVINSVVIARKKVVFDRNTVDENDEKRGILVNTSSIVLAEKCSGFNGFSPMIEEQLS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6701708 6702187 + Lsi11G006350.1 Lsi11g00635 673802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00635 159 Gene3D Vaccinia Virus protein VP39 1 115 IPR029063 -
Lsi11g00635 159 PANTHER NICOTIANAMINE SYNTHASE 3 1 121 IPR004298 GO:0030410|GO:0030418
Lsi11g00635 159 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 118 IPR004298 GO:0030410|GO:0030418
Lsi11g00635 159 Pfam Nicotianamine synthase protein 2 115 IPR004298 GO:0030410|GO:0030418
Lsi11g00635 159 PANTHER NICOTIANAMINE SYNTHASE, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00635 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101203651 281.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00633 Lsi-Chr11:6689014 Lsi11g00635 Lsi-Chr11:6701708 8.53E-46 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00633 CCT 1 276 Nicotianamine Synthase Gene Family AT1G09240 59.6 4.1e-89 325.1
Lsi06g00055 CCT 1 271 Nicotianamine Synthase Gene Family AT1G09240 58.5 1.5e-88 323.2
Lsi06g01131 . 16 285 Nicotianamine Synthase Gene Family AT1G09240 55.1 2.3e-76 282.7
Lsi11g00635 . 1 116 Nicotianamine Synthase Gene Family AT1G09240 65.5 3.9e-39 159.1
Lsi11g00634 . 1 147 Nicotianamine Synthase Gene Family AT1G09240 53.4 5.1e-39 158.7
Lsi06g00055 CCT 3 271 Nicotianamine Synthase Gene Family AT1G56430 60.1 8.0e-93 337.4
Lsi11g00633 CCT 3 276 Nicotianamine Synthase Gene Family AT1G56430 60.7 2.2e-90 329.3
Lsi06g01131 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 54.1 1.5e-78 290.0
Lsi11g00634 . 4 147 Nicotianamine Synthase Gene Family AT1G56430 55.2 8.4e-42 167.9
Lsi11g00635 . 1 159 Nicotianamine Synthase Gene Family AT1G56430 55.8 1.4e-41 167.2
Lsi11g00633 CCT 1 276 Nicotianamine Synthase Gene Family AT5G04950 58.4 4.4e-91 331.6
Lsi06g00055 CCT 1 271 Nicotianamine Synthase Gene Family AT5G04950 54.3 1.2e-85 313.5
Lsi06g01131 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 51.5 4.1e-73 271.9
Lsi11g00634 . 8 146 Nicotianamine Synthase Gene Family AT5G04950 53.9 2.5e-38 156.4
Lsi11g00635 . 1 113 Nicotianamine Synthase Gene Family AT5G04950 63.7 4.7e-37 152.1
Lsi11g00633 CCT 1 276 Nicotianamine Synthase Gene Family AT5G56080 57.9 1.4e-89 326.6
Lsi06g00055 CCT 1 271 Nicotianamine Synthase Gene Family AT5G56080 56.0 2.2e-87 319.3
Lsi06g01131 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.7 5.9e-72 268.1
Lsi11g00634 . 1 146 Nicotianamine Synthase Gene Family AT5G56080 53.1 1.0e-39 161.0
Lsi11g00635 . 1 113 Nicotianamine Synthase Gene Family AT5G56080 62.8 1.4e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00635 Lsi_Chr11 FPKM 6.4375 7.446149 1.778218 2.065002 2.264771 1.921116 1.9698 0.348268 0.203751 0.186794