Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00638 | ATGGAAGAGTTTTACAGGCTTAACAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTTGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGGATCCATGAAGCTTTAATGGTGGATGATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGCTTGAACATGTCTGACATAATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCAGCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCTCCTAGGTCTTCTATTGAGTTGGGAGCTGATCCTCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAACTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACCGCGACGTCGGATTCTCGCTCAGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACCAAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACACGAAAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGGAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTTTACTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCCGAAGATATGCGATTCGTGCTTATGGATGGGGCCGGGGCCGGAGAATGCATGAAAGGATCGAATTTTTATGACAATGGAGAAACTGGAGGCCATGTAATTTGA | 966 | 43.89 | MEEFYRLNNSVIASYSNGVVGGEAIASTSCGGIHEALMVDDDMLQLEAEATTGLNMSDIIKTQIVNHPLYPKLVSAYIECQKVGAPAQVASLLEEIGRENHPPRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTATSDSRSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGAGECMKGSNFYDNGETGGHVI | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6717313 | 6720767 | - | Lsi11G006380.1 | Lsi11g00638 | 673805 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00638 | 321 | Pfam | ELK domain | 204 | 225 | IPR005539 | GO:0003677 | |
Lsi11g00638 | 321 | ProSiteProfiles | ELK domain profile. | 204 | 224 | IPR005539 | GO:0003677 | |
Lsi11g00638 | 321 | CDD | homeodomain | 236 | 287 | IPR001356 | GO:0003677 | |
Lsi11g00638 | 321 | SMART | HOX_1 | 226 | 291 | IPR001356 | GO:0003677 | |
Lsi11g00638 | 321 | Pfam | KNOX1 domain | 60 | 101 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi11g00638 | 321 | ProSitePatterns | 'Homeobox' domain signature. | 262 | 285 | IPR017970 | GO:0000981|GO:0006355 | |
Lsi11g00638 | 321 | Pfam | Homeobox KN domain | 244 | 283 | IPR008422 | GO:0003677|GO:0006355 | |
Lsi11g00638 | 321 | Gene3D | - | 222 | 293 | - | - | |
Lsi11g00638 | 321 | Pfam | KNOX2 domain | 109 | 155 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi11g00638 | 321 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 298 | - | - | |
Lsi11g00638 | 321 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 | 1 | 298 | - | - | |
Lsi11g00638 | 321 | MobiDBLite | consensus disorder prediction | 162 | 193 | - | - | |
Lsi11g00638 | 321 | SUPERFAMILY | Homeodomain-like | 226 | 296 | IPR009057 | - | |
Lsi11g00638 | 321 | SMART | ELK_2 | 204 | 225 | IPR005539 | GO:0003677 | |
Lsi11g00638 | 321 | ProSiteProfiles | 'Homeobox' domain profile. | 224 | 287 | IPR001356 | GO:0003677 | |
Lsi11g00638 | 321 | SMART | KNOX1_2 | 58 | 102 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi11g00638 | 321 | SMART | KNOX2_2 | 105 | 156 | IPR005541 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01663 | Lsi-Chr8:24399936 | Lsi11g00638 | Lsi-Chr11:6717313 | 3.53E-41 | dispersed | |
Lsi09g00319 | Lsi-Chr9:3295926 | Lsi11g00638 | Lsi-Chr11:6717313 | 2.27E-06 | dispersed | |
Lsi11g00638 | Lsi-Chr11:6717313 | Lsi11g01422 | Lsi-Chr11:22788484 | 8.75E-70 | dispersed | |
Lsi11g00638 | Lsi-Chr11:6717313 | Lsi01g00456 | Lsi-Chr1:3790826 | 6.58E-70 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26157 | PF03791 | KNOX2 | 3.70E-21 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00638 | - | - | csv:101203403 | 590.882 |