Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00638 ATGGAAGAGTTTTACAGGCTTAACAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTTGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGGATCCATGAAGCTTTAATGGTGGATGATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGCTTGAACATGTCTGACATAATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCAGCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCTCCTAGGTCTTCTATTGAGTTGGGAGCTGATCCTCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAACTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACCGCGACGTCGGATTCTCGCTCAGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACCAAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACACGAAAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGGAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTTTACTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCCGAAGATATGCGATTCGTGCTTATGGATGGGGCCGGGGCCGGAGAATGCATGAAAGGATCGAATTTTTATGACAATGGAGAAACTGGAGGCCATGTAATTTGA 966 43.89 MEEFYRLNNSVIASYSNGVVGGEAIASTSCGGIHEALMVDDDMLQLEAEATTGLNMSDIIKTQIVNHPLYPKLVSAYIECQKVGAPAQVASLLEEIGRENHPPRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTATSDSRSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGAGECMKGSNFYDNGETGGHVI 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6717313 6720767 - Lsi11G006380.1 Lsi11g00638 673805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00638 321 Pfam ELK domain 204 225 IPR005539 GO:0003677
Lsi11g00638 321 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Lsi11g00638 321 CDD homeodomain 236 287 IPR001356 GO:0003677
Lsi11g00638 321 SMART HOX_1 226 291 IPR001356 GO:0003677
Lsi11g00638 321 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Lsi11g00638 321 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Lsi11g00638 321 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Lsi11g00638 321 Gene3D - 222 293 - -
Lsi11g00638 321 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Lsi11g00638 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Lsi11g00638 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 298 - -
Lsi11g00638 321 MobiDBLite consensus disorder prediction 162 193 - -
Lsi11g00638 321 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Lsi11g00638 321 SMART ELK_2 204 225 IPR005539 GO:0003677
Lsi11g00638 321 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Lsi11g00638 321 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Lsi11g00638 321 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01663 Lsi-Chr8:24399936 Lsi11g00638 Lsi-Chr11:6717313 3.53E-41 dispersed
Lsi09g00319 Lsi-Chr9:3295926 Lsi11g00638 Lsi-Chr11:6717313 2.27E-06 dispersed
Lsi11g00638 Lsi-Chr11:6717313 Lsi11g01422 Lsi-Chr11:22788484 8.75E-70 dispersed
Lsi11g00638 Lsi-Chr11:6717313 Lsi01g00456 Lsi-Chr1:3790826 6.58E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26157 PF03791 KNOX2 3.70E-21 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00638 - - csv:101203403 590.882