Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00654 ATGGAATTAGGAGATAATATTACAGCATTGATAGGGATGATTGTATTACAAGTATGCTATGCTGGTATAAATATTATCTCAAAGCTTGCCATGCAATCTGGAATGAACCCTCTTGTTCTTCTCACTTATAGACAGCTTTTTGGCACTTTGGCCATTGCTCCTTATGCCTTTTTTACTGAAAGAGCAACAGGAAACCAGATATGCTTCTTTGTTGGGTTGAAATACACAAACCCAACAATTTCAAGTGCTATGGCCAATGCTCTTCCAGCTGCTACTTTTATTCTTGCTGTTCTTTTCAGACAAGAGAGTGTGAGAATCAAGACCAAGTCTGGTTTTGCAAAGGTAACAGGGACAATTGTGTGTGTATGTGGGGCAATGCTGCTGTCTTTTTACCATGGACACACCATTGACTTAGGTGAATCAAAAATTCACTGGCCCTATGTTGAGAGAATGATGAAGGCAACAACCCCGGCAAACCGTCAAGGAAACCGCATCCTCGGTTCGATTTGGTTGCTTTTGAGCTCTTTTGCTTGGGCATTATGGTTCGTCATCCAAGCAAGATTGAGTGTCAAGTTCAAAGCTCCTTACACAAGTACTACATTGTTGTGCTTCATGGCCTTTTTCCAATGTGGATTCATAGCTGTGATTTCAGAGCACAATATTGCTGCTTGGTCTTTGAAAAGCACGATCCGACTCGTTGCAGCTCTTTACGCAGGAGTTGTGTGCTCTGGATTGACATTTAGCATAACTTCATGGATTATACAAAGGAAAGGCCCTCTCTATGTCTCCATTTTCACCCCTTTATTGCTTATCATGGTGGCTATCCTTAGTTGGGCTCTCCTCCATGAACAACTCTACGTCGGAACTGTTATTGGCTCAATTTTGATAATCATTGGGCTTTATGCTGTGCTATGGGGAAAGTCCAAGGAGATGAAAGTAGAAGATGATGATCACAACATGGAAAAACCAACAATAGAGAAGAAGCCAAATGGGAGTCATATTATTGAAGAGAAGGATGAAATGGAATTGCAAATCAAATACATCAAATAA 1050 40.76 MELGDNITALIGMIVLQVCYAGINIISKLAMQSGMNPLVLLTYRQLFGTLAIAPYAFFTERATGNQICFFVGLKYTNPTISSAMANALPAATFILAVLFRQESVRIKTKSGFAKVTGTIVCVCGAMLLSFYHGHTIDLGESKIHWPYVERMMKATTPANRQGNRILGSIWLLLSSFAWALWFVIQARLSVKFKAPYTSTTLLCFMAFFQCGFIAVISEHNIAAWSLKSTIRLVAALYAGVVCSGLTFSITSWIIQRKGPLYVSIFTPLLLIMVAILSWALLHEQLYVGTVIGSILIIIGLYAVLWGKSKEMKVEDDDHNMEKPTIEKKPNGSHIIEEKDEMELQIKYIK 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6877896 6881433 - Lsi11G006540.1 Lsi11g00654 673821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00654 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 309 - -
Lsi11g00654 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 131 - -
Lsi11g00654 349 PANTHER WAT1-RELATED PROTEIN 9 63 - -
Lsi11g00654 349 PANTHER WAT1-RELATED PROTEIN 61 320 - -
Lsi11g00654 349 Pfam EamA-like transporter family 166 304 IPR000620 GO:0016020|GO:0016021
Lsi11g00654 349 PANTHER WAT1-RELATED PROTEIN 9 63 IPR030184 GO:0016021|GO:0022857
Lsi11g00654 349 PANTHER WAT1-RELATED PROTEIN 61 320 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01139 Lsi-Chr2:13440788 Lsi11g00654 Lsi-Chr11:6877896 4.62E-24 dispersed
Lsi11g00654 Lsi-Chr11:6877896 Lsi03g01629 Lsi-Chr3:27416313 4.48E-66 dispersed
Lsi11g00654 Lsi-Chr11:6877896 Lsi04g02384 Lsi-Chr4:30985937 7.21E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00654 - - csv:101217670 584.334