Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00684 ATGTTTGACTGTGGTTACAAGTCACAATTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGCGGGTTTAATATAGATGGATTTAACCGTGCAGTCCATGGAAATGATAAGCCGTCTGGATCCTTCAAGAGAGGAATGAGAAAAGGGTCCGAAGGACTTAAATCAATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTTGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCTGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTTGAAGTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGGCGGTATTTCATCATTGACTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTGAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTGGCTTCAGAGTTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAAAAGTATTGTAGTCCCTCTATTTGCAGGAAAGATTTCTTGTATTGTGGTAACCAAGACATGGAAGGTTATGCAGCTTGGAACCAGACAGGTGTGGCTGGCCTTATGTCAAATTGCGCACCTGCTGATGGAAATGATCAGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCTTCCAAGAACTTTATTGCTAAATATTGTTACTGTCTGTGGTGGGGACTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTATCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGATTGCTGCCGCAGGATCTTCGGGAGAGAGTCAGGCGTTATGATCAGTATAAGTGGTTGGAAACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTGCGTGAGGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACCACAGATGGTGGGCGGAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGACTTTTGTGGTGAAGAGCTTTTGACCTGGGCTTTGGACCCGAAATCTGGTTCAAATCTTCCATCTTCTACAAGGACAGTAAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAGTTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCACAACAATGGAGGACCTGGGCTGCTTGCTTCATCCAAGCCGCATGGCGTCGATATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCAAACTGCCACAAGCGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGAGGCGTTCAGCGATATCGGAACGCAAAGAGCGCTCAGGAATTGATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2205 43.54 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQSLKCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLERSKGSDVYVTKQALLLIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCSPSICRKDFLYCGNQDMEGYAAWNQTGVAGLMSNCAPADGNDQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7207436 7228774 - Lsi11G006840.1 Lsi11g00684 673851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00684 734 Gene3D Jelly Rolls 503 623 IPR014710 -
Lsi11g00684 734 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Lsi11g00684 734 Pfam Ion transport protein 109 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi11g00684 734 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Lsi11g00684 734 Pfam Cyclic nucleotide-binding domain 530 615 IPR000595 -
Lsi11g00684 734 Gene3D - 110 430 - -
Lsi11g00684 734 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi11g00684 734 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi11g00684 734 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi11g00684 734 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi11g00684 734 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi11g00684 734 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi11g00684 734 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Lsi11g00684 734 SMART cnmp_10 505 636 IPR000595 -
Lsi11g00684 734 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 731 - -
Lsi11g00684 734 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Lsi11g00684 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 731 - -
Lsi11g00684 734 CDD CAP_ED 505 636 IPR000595 -
Lsi11g00684 734 Gene3D Helix hairpin bin 433 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01439 Lsi-Chr3:25336909 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi04g02203 Lsi-Chr4:29068095 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi05g00084 Lsi-Chr5:1564481 Lsi11g00684 Lsi-Chr11:7207436 4.08E-146 dispersed
Lsi05g00085 Lsi-Chr5:1572874 Lsi11g00684 Lsi-Chr11:7207436 9.51E-155 dispersed
Lsi05g02118 Lsi-Chr5:28052480 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi06g01543 Lsi-Chr6:25786415 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi07g00120 Lsi-Chr7:1352537 Lsi11g00684 Lsi-Chr11:7207436 6.57E-120 dispersed
Lsi09g00029 Lsi-Chr9:279115 Lsi11g00684 Lsi-Chr11:7207436 1.14E-79 dispersed
Lsi10g01258 Lsi-Chr10:16827240 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi11g00684 Lsi-Chr11:7207436 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00684 K05391 - csv:101219180 1369.76