Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00720 ATGGATACTCTCTCTGAACCCATTTCTAAGCTTCCTCTTCTGCCGCCGCCGCCGCCGCCGCCGGAGACCCAATCGGACGGTGGTTTCAGTTTAGACAACGAAGTAAGTCCCACAATTCTCTTAGCCATAATCATCCTCGCCATAATCTTCTTCTTCTCCGGCCTCCTCCACCTTCTCCTCCGATTCTTCCACAAGCCCCAAATCAGAACTGACCCGGAAGATTCCGCCGTTGACGGCGGCGCCTCTGCTTTCCAAGGTCAACTTCGGCAGCTCTTCCATCTCCATGACGCCGGCGTTGACCAATCCTTCATTGATACGCTCCCTGTTTTTCTCTATAAAGCTATAATCGGTTTGAAATTAGACCCATTTGATTGCTCTGTTTGTCTCTGTGAATTTCAGCCTCATGACAAACTCCGATTATTGACGAAATGCAGCCATGCTTTTCATATGGATTGCATAGACACTTGGCTTTTGACACATTCAACTTGTCCTCTCTGCCGTGCGAGTTTGGTTTCTGATTTCGCCGCCATTAATGGCGGATTCTCGTCTCCAATTGTTGGGGTTCTTGAATCTGCAAGTAACAGTTCAAGAGAAATTGGGGAAATTCACACCGGTTCCTTTCTGGGTTTTCTTGGGGATGCGTCGAACTTGGTTGAATTGAAACCAGATGAAACTCCGGTTACGGCGGCGGAGACGGTGGTTCCGATTAAATTGGGGAAATTTAAGAACTTGGAGAGTAGTGGAGAAGGAAGCAGTAATAATGGCAATGTGGGTTCGAGGAGGTGTTTTTCAATGGGGTCATTTGGGTATATAATGGATGAGAATTCGTCTCTGCAAGTTCCGATCAGGACGCCGGCGGTGAGGAAACCGGCGAGGAAGAAGAAGGATCTGCCATTAACGCTGGGAAACAGAGCAGCAATGTCGGAATGCGATTGCGAATCGAGACGAGAGTTTAATTTCAACGAATTGAATCGGAGAGTTGAGAGTTTTGGCCATGGGAAGTCGAAGGAGAGCTGTGAAGAGAAGGTTTCCGGCGGCGGCGACAGAGTGCCGGTAACGGATTTGTCTAGAAGGGCGTTTTCGTTTCATTTTCCGGCGAATTGGAACCGACCCAGATCGGAAAATGGGATGGGAATGATGGATGAAGAGAATCAGAGAAGAAACAGTTTGGAATTTATTGAGAATCGGCCGTCGTTTGTGAGAAGAACGTTACAGTGGCTGATGGGGAAGAACAACAATAGGATTGTTCATTCATCTTTTACACCCAATGATGATGAGGATGATTCTTGA 1290 47.6 MDTLSEPISKLPLLPPPPPPPETQSDGGFSLDNEVSPTILLAIIILAIIFFFSGLLHLLLRFFHKPQIRTDPEDSAVDGGASAFQGQLRQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSVCLCEFQPHDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLVSDFAAINGGFSSPIVGVLESASNSSREIGEIHTGSFLGFLGDASNLVELKPDETPVTAAETVVPIKLGKFKNLESSGEGSSNNGNVGSRRCFSMGSFGYIMDENSSLQVPIRTPAVRKPARKKKDLPLTLGNRAAMSECDCESRREFNFNELNRRVESFGHGKSKESCEEKVSGGGDRVPVTDLSRRAFSFHFPANWNRPRSENGMGMMDEENQRRNSLEFIENRPSFVRRTLQWLMGKNNNRIVHSSFTPNDDEDDS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7802202 7803491 + Lsi11G007200.1 Lsi11g00720 673887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00720 429 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Lsi11g00720 429 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 12 370 - -
Lsi11g00720 429 CDD RING-H2_PA-TM-RING 124 167 - -
Lsi11g00720 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 172 IPR013083 -
Lsi11g00720 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 12 370 - -
Lsi11g00720 429 Pfam Ring finger domain 124 167 IPR001841 -
Lsi11g00720 429 MobiDBLite consensus disorder prediction 10 24 - -
Lsi11g00720 429 SUPERFAMILY RING/U-box 107 173 - -
Lsi11g00720 429 SMART ring_2 125 166 IPR001841 -
Lsi11g00720 429 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01233 Lsi11g00720 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00357 Lsi-Chr2:3051094 Lsi11g00720 Lsi-Chr11:7802202 6.99E-48 dispersed
Lsi04g00529 Lsi-Chr4:4879568 Lsi11g00720 Lsi-Chr11:7802202 6.70E-57 dispersed
Lsi11g00720 Lsi-Chr11:7802202 Lsi05g01890 Lsi-Chr5:26073667 3.02E-24 dispersed
Lsi11g00720 Lsi-Chr11:7802202 Lsi02g01549 Lsi-Chr2:21345539 6.93E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00720 - - bhj:120080086 753.051