Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00723 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCCTGCCTCATCAACGGCACCACCGGCGAGGTCCACACCTATGCCGCGGTCGACCTAGCAGCCCGATGTGTCGCTGCCGGGCTGAGCAAGATCGGTGTCGGACAAGGCGATGTGATAATGCTCATGCTCCAAAACAGCCCGGAGTTCGTGTTCGCGTTCCTCGGCGCGTCGTTTGCTGGTGCAATTAGCACGACGGCGAATCCGTTGTATAAGCCAGGGGAGATTGCGAAGCAGGCAGCGGCGGCGAGGCCGAAGGTAATTATTACACAAGCGGAGTTTGTGGAGAAGGTTTGGGGATTTGCGGTGGAACATGGGGTGAAGATATTGTGTACGGATTCGCCGCCGGTGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTCTCATCCGGAACTACTGGAGTTCCTAAAGGAGTTATGTTAACGCATAAATCTCTTGTTACAAGCGTAGCTCAACAGGTGGATGGAGAAAATCCAAATGTAAACTTAAATAGCAACGATGTGATTATATGTGTTCTTCCATTATTCCATATCTACTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCCTCTATTCTCATCCTTCAAAAATACGACATGTCGTCCCTTCTTCGACTCATTCAAACCCACAAGGCCACAATTGCCCCCTTCGTCCCTCCCATCGTCTTGGACTTTGCTAAAAACCCCGACATCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGTGCCGCCCCTATGGGAAAGGACCTCGAGGACACCGTCAAAGCTAGGCTCCCCAACGCCACACTCGGACAGGGGTATGGAATGACGGAGGCAGGGCCAGTGCTATCCATGTGTTTGGCGTTTGCAAAGGAACCTTTTGAGGTAAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTCAAACGTCTGTATCTTTGCCACGTAATCATCCTGGTTACCTTAATAACAAAGAAGCAACCGAGAAGACTATAGACAAAGACGGGTGGCTTCATACAGGAGACTTAGGCTTCATCGACGACGACGACGAGATCTTCATCGTCGATCGATTGAAGGAACTGATCAAATACAAAGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTTACATTTCTGCAGCTGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAAAGGTTCCAAGATTAGTGAGAATGATATCAAAAAGTATATTTCAGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTCTTTGTGGACTCAATTCCAATTGCTCCTTCAGGCAAGATATTGAGGAAAGTTTTAAAAGCTCAGTTGGAGGCTGGTGCCTTTTAA 1593 48.02 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGTTGEVHTYAAVDLAARCVAAGLSKIGVGQGDVIMLMLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIAKQAAAARPKVIITQAEFVEKVWGFAVEHGVKILCTDSPPVGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGVPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGASILILQKYDMSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKDLEDTVKARLPNATLGQGYGMTEAGPVLSMCLAFAKEPFEVKSGACGTVVRNAEMKIIHPQTSVSLPRNHPGYLNNKEATEKTIDKDGWLHTGDLGFIDDDDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPYISAAAVIPMEDEAAGEIPVAFVVRSKGSKISENDIKKYISDQVIYYKKIRKVFFVDSIPIAPSGKILRKVLKAQLEAGAF 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7842942 7850507 + Lsi11G007230.1 Lsi11g00723 673890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00723 530 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 526 - -
Lsi11g00723 530 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Lsi11g00723 530 Gene3D - 4 425 IPR042099 -
Lsi11g00723 530 SUPERFAMILY Acetyl-CoA synthetase-like 12 527 - -
Lsi11g00723 530 Pfam AMP-binding enzyme 35 431 IPR000873 -
Lsi11g00723 530 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 526 - -
Lsi11g00723 530 Gene3D - 426 528 IPR045851 -
Lsi11g00723 530 CDD 4CL 22 521 - -
Lsi11g00723 530 Pfam AMP-binding enzyme C-terminal domain 440 515 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01245 Lsi-Chr3:23048096 Lsi11g00723 Lsi-Chr11:7842942 0 dispersed
Lsi04g00690 Lsi-Chr4:6335274 Lsi11g00723 Lsi-Chr11:7842942 3.29E-122 dispersed
Lsi10g00232 Lsi-Chr10:3770732 Lsi11g00723 Lsi-Chr11:7842942 0 transposed
Lsi10g01013 Lsi-Chr10:14377146 Lsi11g00723 Lsi-Chr11:7842942 2.70E-17 transposed
Lsi11g00723 Lsi-Chr11:7842942 Lsi06g01133 Lsi-Chr6:21580207 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00723 K01904 - csv:101210868 938.332