Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00730 | ATGAAAGGTAAGCCTTCGACAATCGACACCGTCACCTCCGTTCTCCCATTCTTCCTCCTCTCGATCTTCTCTTCTTCCTCACCTCACCCTTTGCTGCTTTCCTCCCTCACCGTCGATCTTCCTCCACTCCGTCGATCTCCCTCACGCCGTCTCTTTAATTCCACTCCGTCGATCTCCCTCACGCCGTCTATCTCATCCACTCCGTCGATTTCCAGTGGCACTGAGTCCAAACTCTCAAGGGCCTCAGGCTTAGCTATTCATCAGTGTAAGGATGCTTTTTTGATTCCTTATGATGTGCCAAATGGATTTGGGGAAACCGAAGAATTTGGTTCGTTGAAAACTGAGAAACTGGGAGTTGCTTTCTGTGATGGTTACAAATTTTTGATGGATAGCCCTTTGACGCGGAGCTCTACCCCTAATTCCTCACCTATCTCAAATCCTGGTTCAAATGATGAAAACCCGCGTGTTAAATTCCTGTGCAGCTTCTTAGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGTTATGTTGGGGGAGAGACGAGGATTGTGAGCGTTCAAAGGGATATTAAATATGAGGAGTTGATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAACAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGCGATGGGTTCACTAGGCTCAGGATATTCTTATTTTCGCATTCTGAACAAGATGGTTCTTTGCCCTTTGTGGATGGGGATGAGAGGGATACTGAGAGACGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAACAAAATTCCCCTGCAATTAGTGCCATAGATGATATGCACGGGACTGAACATTTTTTGAATCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACAATATCACCTGCATCAGCTCACAATCCCTCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCTCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCCAGGCATCATGGTCCATATGATTCTAGACAAATGGGAGAATATCCATCTTCTCCATTTGCACGGTACCGTATGCCAATCTCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAACAGATGAATCACCAACATATGTATGAACATCAACCACTGTATAATGAGAATATTGTATGGCTGCCAAATGGAACAATTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCCAGATGGGAATAGTTCTTGTGAACATTGTCGGGCAAATTTTCATCGGTATCAAGCACACATGGAGCAAGCAAATACGTTAAATGGACTTCCCCTTGAATACTCTCAGAGTAGGGAGGCCTTGATGCAGAAGGCAGACACGAAGTTCCATCATGGTATTTTTCCAAATGAGCAAAATATTAATGATCATCGATCTGCTTATAATGAGACACCACCCCATGAGAAAGGATGGATCATGCAACACCAGATGAGTGTGCGAGGTGATGACATGAGAACGCATGTTTCTGGGGCTGGACGGTTGAATGATCACTACACTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACGAATTTTCATGATGAGGTATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCTTGAAGATCGCGGTGTTGGTTATACGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCCCCTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAAAAAAATTTGGGTACTGAGGGAGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCACGGTTGGCCATGACAATCAACACTTCACAACCTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAAAGGTCAGATTCATCTTCAGCATTTATTCATGAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCACAACCAAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGGAAAGATGTGCATGGGGAAGGAAACGGACACATGATAAACGATATGGGGAAAGTTGACATTTCTGAAGCAAACATTGTTTCTCATCCAGGGCAGAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATAAACTCTGCAGTAGAAAATGGTGATGGCCTGAAACCTTTTGTAGAGACTCTTGAAAAGCCTAAACTATCTGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTAAAAAGAGCAGCACTAGAAGTATCTGAAGAGGCGATGGTTGAAGAAACCGCCCTAAGGAGACCTGATTCAATAGGCCAAAAAGAGACAACAAATGAGCGACACTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCCGGAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACCATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGTTCTGGGACTTACGGTGCTGTTTATCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTGAGCTCTTTACACCATCCAAATGTTGTTTCTTTTTATGGTATTGTTCGCGATGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATTGATCGTCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTTTGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTGGTTTCGGGAGGAGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAAATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATCCCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATGTGAAATAG | 3693 | 43.19 | MKGKPSTIDTVTSVLPFFLLSIFSSSSPHPLLLSSLTVDLPPLRRSPSRRLFNSTPSISLTPSISSTPSISSGTESKLSRASGLAIHQCKDAFLIPYDVPNGFGETEEFGSLKTEKLGVAFCDGYKFLMDSPLTRSSTPNSSPISNPGSNDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDIKYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHSEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQQNSPAISAIDDMHGTEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRQMGEYPSSPFARYRMPISDLPDKYLERMPEDYVRQQMNHQHMYEHQPLYNENIVWLPNGTISEESGFPGNILHGHGVPDGNSSCEHCRANFHRYQAHMEQANTLNGLPLEYSQSREALMQKADTKFHHGIFPNEQNINDHRSAYNETPPHEKGWIMQHQMSVRGDDMRTHVSGAGRLNDHYTVDGSGSNFPPTQSNITDGYHASTNFHDEVFRDQVVPSGQHMCVPPLEDRGVGYTPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPPYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQKNLGTEGATGSEHLPGHVLKTNSTTVGHDNQHFTTLEHIQPHLDKINLVASPMQRSDSSSAFIHEKMVAPFHPSQNPQPRAVSVVNEAMMMERKDVHGEGNGHMINDMGKVDISEANIVSHPGQNNTDDTYSKVAPLESLNSTCINSAVENGDGLKPFVETLEKPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETALRRPDSIGQKETTNERHSSNAHGEPELETESDNQSSGIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGNEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNVK | 1230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7944044 | 7956363 | + | Lsi11G007300.1 | Lsi11g00730 | 673897 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00730 | 1230 | PRINTS | Tyrosine kinase catalytic domain signature | 1191 | 1213 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00730 | 1230 | PRINTS | Tyrosine kinase catalytic domain signature | 1076 | 1094 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00730 | 1230 | PRINTS | Tyrosine kinase catalytic domain signature | 1039 | 1052 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00730 | 1230 | PRINTS | Tyrosine kinase catalytic domain signature | 1147 | 1169 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00730 | 1230 | SUPERFAMILY | Protein kinase-like (PK-like) | 945 | 1218 | IPR011009 | - | |
Lsi11g00730 | 1230 | ProSiteProfiles | Protein kinase domain profile. | 957 | 1223 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00730 | 1230 | SMART | PB1_new | 170 | 255 | IPR000270 | GO:0005515 | |
Lsi11g00730 | 1230 | Pfam | PB1 domain | 171 | 255 | IPR000270 | GO:0005515 | |
Lsi11g00730 | 1230 | ProSitePatterns | Protein kinases ATP-binding region signature. | 963 | 984 | IPR017441 | GO:0005524 | |
Lsi11g00730 | 1230 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1082 | 1094 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00730 | 1230 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 146 | 1230 | - | - | |
Lsi11g00730 | 1230 | SMART | serkin_6 | 957 | 1226 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00730 | 1230 | MobiDBLite | consensus disorder prediction | 133 | 152 | - | - | |
Lsi11g00730 | 1230 | Gene3D | Phosphorylase Kinase; domain 1 | 943 | 1043 | - | - | |
Lsi11g00730 | 1230 | Pfam | Protein tyrosine and serine/threonine kinase | 958 | 1220 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00730 | 1230 | CDD | PB1_UP2 | 159 | 255 | - | - | |
Lsi11g00730 | 1230 | Gene3D | - | 174 | 257 | - | - | |
Lsi11g00730 | 1230 | MobiDBLite | consensus disorder prediction | 890 | 926 | - | - | |
Lsi11g00730 | 1230 | CDD | STKc_MAP3K-like | 963 | 1220 | - | - | |
Lsi11g00730 | 1230 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 146 | 1230 | - | - | |
Lsi11g00730 | 1230 | MobiDBLite | consensus disorder prediction | 890 | 943 | - | - | |
Lsi11g00730 | 1230 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1044 | 1230 | - | - | |
Lsi11g00730 | 1230 | SUPERFAMILY | CAD & PB1 domains | 172 | 260 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00734 | Lsi-Chr5:10026020 | Lsi11g00730 | Lsi-Chr11:7944044 | 1.60E-33 | dispersed | |
Lsi09g00499 | Lsi-Chr9:5199472 | Lsi11g00730 | Lsi-Chr11:7944044 | 7.15E-06 | dispersed | |
Lsi10g01517 | Lsi-Chr10:19440262 | Lsi11g00730 | Lsi-Chr11:7944044 | 5.57E-29 | dispersed | |
Lsi11g00730 | Lsi-Chr11:7944044 | Lsi07g01075 | Lsi-Chr7:16102866 | 4.81E-49 | dispersed | |
Lsi11g00730 | Lsi-Chr11:7944044 | Lsi02g00547 | Lsi-Chr2:4789698 | 3.53E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84032 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-61 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00730 | - | - | csv:101215475 | 2115.5 |