Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00730 ATGAAAGGTAAGCCTTCGACAATCGACACCGTCACCTCCGTTCTCCCATTCTTCCTCCTCTCGATCTTCTCTTCTTCCTCACCTCACCCTTTGCTGCTTTCCTCCCTCACCGTCGATCTTCCTCCACTCCGTCGATCTCCCTCACGCCGTCTCTTTAATTCCACTCCGTCGATCTCCCTCACGCCGTCTATCTCATCCACTCCGTCGATTTCCAGTGGCACTGAGTCCAAACTCTCAAGGGCCTCAGGCTTAGCTATTCATCAGTGTAAGGATGCTTTTTTGATTCCTTATGATGTGCCAAATGGATTTGGGGAAACCGAAGAATTTGGTTCGTTGAAAACTGAGAAACTGGGAGTTGCTTTCTGTGATGGTTACAAATTTTTGATGGATAGCCCTTTGACGCGGAGCTCTACCCCTAATTCCTCACCTATCTCAAATCCTGGTTCAAATGATGAAAACCCGCGTGTTAAATTCCTGTGCAGCTTCTTAGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGTTATGTTGGGGGAGAGACGAGGATTGTGAGCGTTCAAAGGGATATTAAATATGAGGAGTTGATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAACAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGCGATGGGTTCACTAGGCTCAGGATATTCTTATTTTCGCATTCTGAACAAGATGGTTCTTTGCCCTTTGTGGATGGGGATGAGAGGGATACTGAGAGACGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAACAAAATTCCCCTGCAATTAGTGCCATAGATGATATGCACGGGACTGAACATTTTTTGAATCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACAATATCACCTGCATCAGCTCACAATCCCTCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCTCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCCAGGCATCATGGTCCATATGATTCTAGACAAATGGGAGAATATCCATCTTCTCCATTTGCACGGTACCGTATGCCAATCTCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAACAGATGAATCACCAACATATGTATGAACATCAACCACTGTATAATGAGAATATTGTATGGCTGCCAAATGGAACAATTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCCAGATGGGAATAGTTCTTGTGAACATTGTCGGGCAAATTTTCATCGGTATCAAGCACACATGGAGCAAGCAAATACGTTAAATGGACTTCCCCTTGAATACTCTCAGAGTAGGGAGGCCTTGATGCAGAAGGCAGACACGAAGTTCCATCATGGTATTTTTCCAAATGAGCAAAATATTAATGATCATCGATCTGCTTATAATGAGACACCACCCCATGAGAAAGGATGGATCATGCAACACCAGATGAGTGTGCGAGGTGATGACATGAGAACGCATGTTTCTGGGGCTGGACGGTTGAATGATCACTACACTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACGAATTTTCATGATGAGGTATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCTTGAAGATCGCGGTGTTGGTTATACGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCCCCTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAAAAAAATTTGGGTACTGAGGGAGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCACGGTTGGCCATGACAATCAACACTTCACAACCTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAAAGGTCAGATTCATCTTCAGCATTTATTCATGAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCACAACCAAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGGAAAGATGTGCATGGGGAAGGAAACGGACACATGATAAACGATATGGGGAAAGTTGACATTTCTGAAGCAAACATTGTTTCTCATCCAGGGCAGAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATAAACTCTGCAGTAGAAAATGGTGATGGCCTGAAACCTTTTGTAGAGACTCTTGAAAAGCCTAAACTATCTGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTAAAAAGAGCAGCACTAGAAGTATCTGAAGAGGCGATGGTTGAAGAAACCGCCCTAAGGAGACCTGATTCAATAGGCCAAAAAGAGACAACAAATGAGCGACACTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCCGGAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACCATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGTTCTGGGACTTACGGTGCTGTTTATCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTGAGCTCTTTACACCATCCAAATGTTGTTTCTTTTTATGGTATTGTTCGCGATGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATTGATCGTCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTTTGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTGGTTTCGGGAGGAGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAAATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATCCCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATGTGAAATAG 3693 43.19 MKGKPSTIDTVTSVLPFFLLSIFSSSSPHPLLLSSLTVDLPPLRRSPSRRLFNSTPSISLTPSISSTPSISSGTESKLSRASGLAIHQCKDAFLIPYDVPNGFGETEEFGSLKTEKLGVAFCDGYKFLMDSPLTRSSTPNSSPISNPGSNDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDIKYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHSEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQQNSPAISAIDDMHGTEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRQMGEYPSSPFARYRMPISDLPDKYLERMPEDYVRQQMNHQHMYEHQPLYNENIVWLPNGTISEESGFPGNILHGHGVPDGNSSCEHCRANFHRYQAHMEQANTLNGLPLEYSQSREALMQKADTKFHHGIFPNEQNINDHRSAYNETPPHEKGWIMQHQMSVRGDDMRTHVSGAGRLNDHYTVDGSGSNFPPTQSNITDGYHASTNFHDEVFRDQVVPSGQHMCVPPLEDRGVGYTPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPPYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQKNLGTEGATGSEHLPGHVLKTNSTTVGHDNQHFTTLEHIQPHLDKINLVASPMQRSDSSSAFIHEKMVAPFHPSQNPQPRAVSVVNEAMMMERKDVHGEGNGHMINDMGKVDISEANIVSHPGQNNTDDTYSKVAPLESLNSTCINSAVENGDGLKPFVETLEKPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETALRRPDSIGQKETTNERHSSNAHGEPELETESDNQSSGIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGNEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNVK 1230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7944044 7956363 + Lsi11G007300.1 Lsi11g00730 673897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00730 1230 PRINTS Tyrosine kinase catalytic domain signature 1191 1213 IPR001245 GO:0004672|GO:0006468
Lsi11g00730 1230 PRINTS Tyrosine kinase catalytic domain signature 1076 1094 IPR001245 GO:0004672|GO:0006468
Lsi11g00730 1230 PRINTS Tyrosine kinase catalytic domain signature 1039 1052 IPR001245 GO:0004672|GO:0006468
Lsi11g00730 1230 PRINTS Tyrosine kinase catalytic domain signature 1147 1169 IPR001245 GO:0004672|GO:0006468
Lsi11g00730 1230 SUPERFAMILY Protein kinase-like (PK-like) 945 1218 IPR011009 -
Lsi11g00730 1230 ProSiteProfiles Protein kinase domain profile. 957 1223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00730 1230 SMART PB1_new 170 255 IPR000270 GO:0005515
Lsi11g00730 1230 Pfam PB1 domain 171 255 IPR000270 GO:0005515
Lsi11g00730 1230 ProSitePatterns Protein kinases ATP-binding region signature. 963 984 IPR017441 GO:0005524
Lsi11g00730 1230 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1082 1094 IPR008271 GO:0004672|GO:0006468
Lsi11g00730 1230 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 146 1230 - -
Lsi11g00730 1230 SMART serkin_6 957 1226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00730 1230 MobiDBLite consensus disorder prediction 133 152 - -
Lsi11g00730 1230 Gene3D Phosphorylase Kinase; domain 1 943 1043 - -
Lsi11g00730 1230 Pfam Protein tyrosine and serine/threonine kinase 958 1220 IPR001245 GO:0004672|GO:0006468
Lsi11g00730 1230 CDD PB1_UP2 159 255 - -
Lsi11g00730 1230 Gene3D - 174 257 - -
Lsi11g00730 1230 MobiDBLite consensus disorder prediction 890 926 - -
Lsi11g00730 1230 CDD STKc_MAP3K-like 963 1220 - -
Lsi11g00730 1230 PANTHER SERINE-THREONINE PROTEIN KINASE 146 1230 - -
Lsi11g00730 1230 MobiDBLite consensus disorder prediction 890 943 - -
Lsi11g00730 1230 Gene3D Transferase(Phosphotransferase) domain 1 1044 1230 - -
Lsi11g00730 1230 SUPERFAMILY CAD & PB1 domains 172 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00734 Lsi-Chr5:10026020 Lsi11g00730 Lsi-Chr11:7944044 1.60E-33 dispersed
Lsi09g00499 Lsi-Chr9:5199472 Lsi11g00730 Lsi-Chr11:7944044 7.15E-06 dispersed
Lsi10g01517 Lsi-Chr10:19440262 Lsi11g00730 Lsi-Chr11:7944044 5.57E-29 dispersed
Lsi11g00730 Lsi-Chr11:7944044 Lsi07g01075 Lsi-Chr7:16102866 4.81E-49 dispersed
Lsi11g00730 Lsi-Chr11:7944044 Lsi02g00547 Lsi-Chr2:4789698 3.53E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84032 PF07714 PK_Tyr_Ser-Thr 1.30E-61 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00730 - - csv:101215475 2115.5