Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00747 ATGCAGTCCTTCGCCGCCGGCTGGCCCGGCGTCGCCACCGCCAAACCCCTCTGCTATTCCTGCAAGTCCGCCACCGCTGTCCTCTTCTGTCGCCATGACGCTGCCTTCCTCTGCCTCCGCTGCGACGCCCAAATACACACCCTCTCCGCCACGCGCCACCCACGTGTCTGGCTCTGCGAAGTCTGCGAACAAGCTCCGGCCACCATCACCTGCAATGCCGACGCTGCCGCCCTCTGCCCCTCCTGCGATGCTGACATCCACTCTGTTAACCCTCTCGCCCGCCGCCACGACCGCGCTGCTATTCAACCCTTCTACGACTCACCTCCGACTGCCTCTGTAGCCTCTGTCTTCAAATTCCTCCTCCCAACTCAACACCAACACGACGTCGTTCAACCCGATTTGAAATCGGAGGACATCTTCTTCTCCGAGATGGATTCGTTGATTGATTTCGATTACCCGACTGCCGGTGATGGAGTTGTTCCGGATCAATCCAAACCAGGAACAGAGTCTACTGCCCCGCCCACCGATTACTCCACTAGAAATTTCTGCGAGTTCGAGCTCTGTAGTACTCGATCTAAACTCGACACCATTAGCTACCCATCTCAGAATCTGAGCCATAGCGTTTCATCATCTTCTTTAGACGTGGGAGTTGTGCCAGATCGGAACACGGCGTCCGACGCATCTTTTCCGGCAGGGCAGATGGCAGAGAAGGCGGTGCAATTGCGGGGCATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAGAATCGGAAATTTGAGAAGACGATTCGGTATGCTTCGAGGAAAGCTTATGCGGAAATTCGACCGAGGGTTAAAGGGAGGTTCGTTAAACGGAGTGAAACGAACTGTGAAATTGACAGAATCTACGCCGGCGCCGGCGTCGGCGTCGGGTTCATGTTAAGCGAGGGGCAATACGGCGTCGTTCCAAGCCTTAGAGTTTGA 972 55.97 MQSFAAGWPGVATAKPLCYSCKSATAVLFCRHDAAFLCLRCDAQIHTLSATRHPRVWLCEVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRAAIQPFYDSPPTASVASVFKFLLPTQHQHDVVQPDLKSEDIFFSEMDSLIDFDYPTAGDGVVPDQSKPGTESTAPPTDYSTRNFCEFELCSTRSKLDTISYPSQNLSHSVSSSSLDVGVVPDRNTASDASFPAGQMAEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSETNCEIDRIYAGAGVGVGFMLSEGQYGVVPSLRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8272990 8274292 + Lsi11G007470.1 Lsi11g00747 673914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00747 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 12 320 IPR045281 GO:0009909
Lsi11g00747 323 Pfam B-box zinc finger 56 98 IPR000315 GO:0008270
Lsi11g00747 323 ProSiteProfiles Zinc finger B-box type profile. 13 58 IPR000315 GO:0008270
Lsi11g00747 323 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 12 320 - -
Lsi11g00747 323 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Lsi11g00747 323 CDD Bbox1_BBX-like 58 98 - -
Lsi11g00747 323 Pfam CCT motif 246 288 IPR010402 GO:0005515
Lsi11g00747 323 SMART bboxneu5 54 101 IPR000315 GO:0008270
Lsi11g00747 323 SMART bboxneu5 13 51 IPR000315 GO:0008270
Lsi11g00747 323 ProSiteProfiles CCT domain profile. 246 288 IPR010402 GO:0005515
Lsi11g00747 323 MobiDBLite consensus disorder prediction 155 176 - -
Lsi11g00747 323 CDD Bbox1_BBX-like 17 58 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01109 Lsi11g00747 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01266 Lsi-Chr8:21077088 Lsi11g00747 Lsi-Chr11:8272990 3.47E-80 dispersed
Lsi11g00747 Lsi-Chr11:8272990 Lsi11g01330 Lsi-Chr11:21919157 4.71E-08 dispersed
Lsi11g00747 Lsi-Chr11:8272990 Lsi06g01109 Lsi-Chr6:21349276 3.81E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26161 PF06203 CCT 1.60E-17 CL0281 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00747 - - cmax:111492359 550.821