Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00748 ATGGGGTTCTCGTCGCCGGTTAAGATACTCGTCGGGATTCCTTCCGGCGACATCGACGAGAGCAAGAAGCTTCTTTCTTGGGCAATCACAGTTCTAGCTCATCAAAATGACTGCATTGTTGCTACTCATGTTCTTGTCAGCGACGATACAAAGAAGCGTGGATCGACAACCATGACAATGAAAATTCAATCGCAGCTTCGTCGAGCAAAAGCTTACGTCATATCAATTCTCGGAGAGTTCGCTAATATTAGCCAATCCAAGCAGGTAAATTTGGAAGCGAGAGTTGGTTTTAACTCGAGCATTGGCAGAGGTTTGACTGAAGAAGCGAAGTCGATTTCAGCCGACCTCCTCGTTCTTCGTGGTGCAAGAAACAAATCAAACAGAACTCCCAGCATTGCAAGGTATTGTTTTGAGAATGCTCCTGAGAAATGTAGTCTGGTCTTATTGGGAAAGCAAGAACAGTTATTGAAGCAAAATTTGGACCCTCATTCTGATTCTATTCCATCTAAAGGAGAAGGAAAATGCGAGGGAGAAGTTTTCAGAGCTCAAAAGACAGAGAGCAATAGGGTTCCGCCACTTGTGGCTGCAGACGATGAGGTCGAAGCCTCCGGCGATTCCATTTCAAACACCACCACAGAGGACGACTCCTCCACGTCGGGTGACTGCAGCACCATTGGCTCTCCTCCGCCACTCGTTTCCCCTTTCAAATCCCAATCCGGTGACCGGCGACAGCGACTGTCGCCGTGTAAGTTGATATCGTCATTCATCGGATCGCCTTTTCGGAAGAGAAATTGCAGCTTTTCTGAGAAGCAATCGGCTCAGCCTTTGTTGAGATGCTTCAGCTATGAGGAGATTTTGAATGCTACCAATAATTTCCATCCAGATAACATGGTAGGTCAAGGTGGTTATTCAGAAGTTTACAAAGGAGAACTATGTGATGGAAAGATGATTGCTGTGAAGAGACTAACAAAAGACAACAAAGATGGTAACAAAGAGAAAGAATTTCTTATGGAACTTGGAATAATTGGCCATGTCTTTCATCCCAACACAGCCTCTTTGCTTGGCTGTTGCATTGAAAATGGCCTTTATCTCATCTTCAACTTCTCTCAAAATGGAAACCTTTTTTCTGCATTGCATGGGAAAACAAGTAAAATATTGGAATGGTCAGTGAGATACAAGATTGCTGTGGGAATTGCAAGGGGTTTGCATTATCTTCATGAATGTTGCAAACATCGAATAATCCATAGAGACATTAAAGCTTCTAATGTCCTTCTTGGCCCTGATTATGAACCCCAGATAACAGACTTTGGGTTAGCAAAATGGCTTCCAAACAAATGGACACACCATGCAGTAGTTCCAATAGAAGGCACATTTGGATACTTAGCACCTGAATATTTCATGCATGGTTTAGTTGATGAAAAAACTGATGTTTTTGCATTTGGAGTTCTTCTTTTGGAGATTGTCTCTGGCAGAAGGCCTGTTGATTCTTCCAAACAAAGCCTTCTCTTGTGGGCAAAGCCTCTTATGGACTCGGGCGAGATCGGGCAACTAGCCGACCCCAGGCTCAAATGCTACGACGCGAAGGAGTTGCAAAGAGTCGTGTTGGCTGCTTCTTGCTGCGTTCGACAGTCCTCGGTCGAGCGACCATCGATGAGCGAGGTATTGGATGTGCTAAATAAAGGCCATGAATCAGAGATTGCAAAGAGCTTGGGAACCCCAAAGTTCACCTCTGAAGATGACAACGAACTAGATGATTACTCCATGATATTTGGATATGAAGTTCCAATAGACATTCTTCTTGAGGATTATTTATGA 1815 44.08 MGFSSPVKILVGIPSGDIDESKKLLSWAITVLAHQNDCIVATHVLVSDDTKKRGSTTMTMKIQSQLRRAKAYVISILGEFANISQSKQVNLEARVGFNSSIGRGLTEEAKSISADLLVLRGARNKSNRTPSIARYCFENAPEKCSLVLLGKQEQLLKQNLDPHSDSIPSKGEGKCEGEVFRAQKTESNRVPPLVAADDEVEASGDSISNTTTEDDSSTSGDCSTIGSPPPLVSPFKSQSGDRRQRLSPCKLISSFIGSPFRKRNCSFSEKQSAQPLLRCFSYEEILNATNNFHPDNMVGQGGYSEVYKGELCDGKMIAVKRLTKDNKDGNKEKEFLMELGIIGHVFHPNTASLLGCCIENGLYLIFNFSQNGNLFSALHGKTSKILEWSVRYKIAVGIARGLHYLHECCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVVPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLEIVSGRRPVDSSKQSLLLWAKPLMDSGEIGQLADPRLKCYDAKELQRVVLAASCCVRQSSVERPSMSEVLDVLNKGHESEIAKSLGTPKFTSEDDNELDDYSMIFGYEVPIDILLEDYL 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8321372 8329743 - Lsi11G007480.1 Lsi11g00748 673915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00748 604 Pfam Universal stress protein family 8 141 IPR006016 -
Lsi11g00748 604 MobiDBLite consensus disorder prediction 203 244 - -
Lsi11g00748 604 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 141 - -
Lsi11g00748 604 MobiDBLite consensus disorder prediction 186 245 - -
Lsi11g00748 604 Pfam Protein kinase domain 293 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00748 604 CDD USP_Like 8 148 - -
Lsi11g00748 604 PANTHER OS08G0249100 PROTEIN 7 594 - -
Lsi11g00748 604 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Lsi11g00748 604 SUPERFAMILY Protein kinase-like (PK-like) 267 558 IPR011009 -
Lsi11g00748 604 Gene3D HUPs 4 148 IPR014729 -
Lsi11g00748 604 Gene3D Phosphorylase Kinase; domain 1 257 368 - -
Lsi11g00748 604 PANTHER OS08G0249100 PROTEIN 7 594 - -
Lsi11g00748 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Lsi11g00748 604 SMART serkin_6 292 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00748 604 ProSiteProfiles Protein kinase domain profile. 292 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00748 604 Gene3D Transferase(Phosphotransferase) domain 1 370 576 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01108 Lsi11g00748 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01186 Lsi-Chr6:22147902 Lsi11g00748 Lsi-Chr11:8321372 1.99E-135 dispersed
Lsi10g00758 Lsi-Chr10:10394485 Lsi11g00748 Lsi-Chr11:8321372 6.29E-80 dispersed
Lsi11g00501 Lsi-Chr11:5305734 Lsi11g00748 Lsi-Chr11:8321372 1.42E-115 dispersed
Lsi11g00748 Lsi-Chr11:8321372 Lsi07g00440 Lsi-Chr7:4686133 5.60E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84033 PF00069 Pkinase 9.00E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00748 - - csv:101218728 1078.54