Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00762 ATGAATTGGTATTCATATGGTTCTTGTTCCATTTGCTGGAGTCTGGTATGGATATTGATTTACTACATTCTAGGTGCTATTTTCGACTCGCCAAAATGTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTATATGAAATTTCAAAGTCACATGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGATATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAGATAATAGAGCATCTTTTGAGACTCATCTCTGAAAAGAAGTTATCTGTGCCTGAGGTTTTGAAAAACCTTGAGCCACAGTCTCCTGTAGCTGGCCATAAAACTACCAAAAGGCAGAGGAAATCTGAGCATCTAGCTCAACTTTCTGTTCCTGCAAGTGACTTTCCAACCAGTAGTTCCCATAATGATTCGGGTCATACGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTAAATCCAGAAGATGCTTTTTGTAGAAGGTGTTCATGCTGCATCTGTCGTCAGTATGATGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGAGGAGCCTCCATTTCAAGGTGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCAGGAATTTCGAAAGCAGGACGAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGCAGAAAACAACTAGTTCATGCAAAAGATACAAGAAGGGTTGACATACTGTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTTGATGAGTCTGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCCGGTGTACCGGTAAAGATGGGTAGAGGTATCGTGAACAGGCTTTCATCTGGACCCGAAGTTCAAAAACTCTGCGCTTCTGCTATTGATTTACTGGACTCAATGCTCTCCAGCAAATCCTTGCATCTTTCGCCTAATCCTGACATTCAAGATGCAAATTTTCTTCCTGCAAACATGGTTAGATTCGAAGATGTTCAGACAACATCCCTCACTCTAGTTTTGAGTTGTGAAAATGGGTCCTCTGAGAACCAGGTTGGCTTCACCATATGGCATCGTAAGGCAGATGATGCAGATTACCTGGCGGAACCAACATGTATTCTACGACAACCGAAGGCGAGGTGTGTTGTGATGGGGCTATCACCTGCTACTAAATATCATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGGGAGTTTGAAGTTCAGTTCTCAACAATTAGGGAGGTAGAAGAGAACCCAGGCTGTTTAGAAATTGAGAGAAGCCAAAGCCACGCAACCAACTGTAGCGACCTTTCTAATCCTTCTTCTGTTGAAGACGAAACTACCGACATTCTTCCCTATGGTGATCGAACCGATAACATAGGAAAGAACTCCACTGCCTATTCAAAGGGTACCGAAATGCTTTCCTCGGCTATTTTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCAGGAACAGTTTCTGTGCTGGATGAGGCAAATGCTGCAGGAATGGTTGGTTTGATTCCCAGCTCTGTTGCATCAAAGCTCGAGAACAGGCATGGACCAACTGCCCCAAAACTCAACACCGATAATCAGTTAAACGCCCTTGTTCGGTCTGGAATGGAGCGCCAGCCATTCGTTGGCTGTTCTGAAGATGGCCTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCATGGTAGAGGTGAGAGACCGAAGTCCGGCTGCAAAGACCTCGATAATAGGACTCGAAAAGGAGGGGAACCCCAAGACGGTGGCACGTCAAAGATGCGAACTGGGGAAAGACAGGACGACAAATGTGCTGAAAACGGTGTCTCGGATCGGGATTTCGAGCATTATGTGAAGGTAATTAGATGGTTAGAGTGCGAGGGTCATATCGAAAAAAATTTCAGGCAGAAATTTCTCACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAGGTGTTTGTTGATACCTTTATTGATGATCCAGCATCTCTTGCCGAACAACTTGTAGATACTTTTTCAGAATGCATTTCGAGCAAAAAACCGATGACTACACCGCCCGGGTTCTGTATGAAGCTGTGGCACTGA 2253 44.07 MNWYSYGSCSICWSLVWILIYYILGAIFDSPKCSKLTMQEKRELVYEISKSHGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKKLSVPEVLKNLEPQSPVAGHKTTKRQRKSEHLAQLSVPASDFPTSSSHNDSGHTACCKNLACRATLNPEDAFCRRCSCCICRQYDDNKDPSLWISCSEEPPFQGDSCNMSCHLECALKDERSGISKAGRSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDESVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIDLLDSMLSSKSLHLSPNPDIQDANFLPANMVRFEDVQTTSLTLVLSCENGSSENQVGFTIWHRKADDADYLAEPTCILRQPKARCVVMGLSPATKYHFKIVQFEGTRELREFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNIGKNSTAYSKGTEMLSSAILSTDAFNLSDNGEEGTPAGTVSVLDEANAAGMVGLIPSSVASKLENRHGPTAPKLNTDNQLNALVRSGMERQPFVGCSEDGLPITPCKLEVLKDSHGRGERPKSGCKDLDNRTRKGGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIDDPASLAEQLVDTFSECISSKKPMTTPPGFCMKLWH 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8597210 8601664 + Lsi11G007620.1 Lsi11g00762 673929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00762 750 Pfam PHD - plant homeodomain finger protein 156 275 IPR032881 -
Lsi11g00762 750 PANTHER VIN3-LIKE PROTEIN 2-RELATED 25 750 IPR044514 GO:0010048|GO:0040029
Lsi11g00762 750 MobiDBLite consensus disorder prediction 112 145 - -
Lsi11g00762 750 PANTHER VIN3-LIKE PROTEIN 2-RELATED 25 750 - -
Lsi11g00762 750 CDD FN3 365 435 IPR003961 GO:0005515
Lsi11g00762 750 MobiDBLite consensus disorder prediction 612 658 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01184 Lsi11g00762 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01018 Lsi-Chr8:18751282 Lsi11g00762 Lsi-Chr11:8597210 2.86E-17 dispersed
Lsi11g00275 Lsi-Chr11:2814108 Lsi11g00762 Lsi-Chr11:8597210 7.84E-23 dispersed
Lsi11g00762 Lsi-Chr11:8597210 Lsi02g02559 Lsi-Chr2:32066689 8.01E-10 dispersed
Lsi11g00762 Lsi-Chr11:8597210 Lsi06g01184 Lsi-Chr6:22123899 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00762 - - csv:101222501 1345.87