Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00762 ATGAATTGGTATTCATATGGTTCTTGTTCCATTTGCTGGAGTCTGGTATGGATATTGATTTACTACATTCTAGGTGCTATTTTCGACTCGCCAAAATGTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTATATGAAATTTCAAAGTCACATGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGATATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAGATAATAGAGCATCTTTTGAGACTCATCTCTGAAAAGAAGTTATCTGTGCCTGAGGTTTTGAAAAACCTTGAGCCACAGTCTCCTGTAGCTGGCCATAAAACTACCAAAAGGCAGAGGAAATCTGAGCATCTAGCTCAACTTTCTGTTCCTGCAAGTGACTTTCCAACCAGTAGTTCCCATAATGATTCGGGTCATACGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTAAATCCAGAAGATGCTTTTTGTAGAAGGTGTTCATGCTGCATCTGTCGTCAGTATGATGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGAGGAGCCTCCATTTCAAGGTGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCAGGAATTTCGAAAGCAGGACGAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGCAGAAAACAACTAGTTCATGCAAAAGATACAAGAAGGGTTGACATACTGTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTTGATGAGTCTGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCCGGTGTACCGGTAAAGATGGGTAGAGGTATCGTGAACAGGCTTTCATCTGGACCCGAAGTTCAAAAACTCTGCGCTTCTGCTATTGATTTACTGGACTCAATGCTCTCCAGCAAATCCTTGCATCTTTCGCCTAATCCTGACATTCAAGATGCAAATTTTCTTCCTGCAAACATGGTTAGATTCGAAGATGTTCAGACAACATCCCTCACTCTAGTTTTGAGTTGTGAAAATGGGTCCTCTGAGAACCAGGTTGGCTTCACCATATGGCATCGTAAGGCAGATGATGCAGATTACCTGGCGGAACCAACATGTATTCTACGACAACCGAAGGCGAGGTGTGTTGTGATGGGGCTATCACCTGCTACTAAATATCATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGGGAGTTTGAAGTTCAGTTCTCAACAATTAGGGAGGTAGAAGAGAACCCAGGCTGTTTAGAAATTGAGAGAAGCCAAAGCCACGCAACCAACTGTAGCGACCTTTCTAATCCTTCTTCTGTTGAAGACGAAACTACCGACATTCTTCCCTATGGTGATCGAACCGATAACATAGGAAAGAACTCCACTGCCTATTCAAAGGGTACCGAAATGCTTTCCTCGGCTATTTTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCAGGAACAGTTTCTGTGCTGGATGAGGCAAATGCTGCAGGAATGGTTGGTTTGATTCCCAGCTCTGTTGCATCAAAGCTCGAGAACAGGCATGGACCAACTGCCCCAAAACTCAACACCGATAATCAGTTAAACGCCCTTGTTCGGTCTGGAATGGAGCGCCAGCCATTCGTTGGCTGTTCTGAAGATGGCCTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCATGGTAGAGGTGAGAGACCGAAGTCCGGCTGCAAAGACCTCGATAATAGGACTCGAAAAGGAGGGGAACCCCAAGACGGTGGCACGTCAAAGATGCGAACTGGGGAAAGACAGGACGACAAATGTGCTGAAAACGGTGTCTCGGATCGGGATTTCGAGCATTATGTGAAGGTAATTAGATGGTTAGAGTGCGAGGGTCATATCGAAAAAAATTTCAGGCAGAAATTTCTCACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAGGTGTTTGTTGATACCTTTATTGATGATCCAGCATCTCTTGCCGAACAACTTGTAGATACTTTTTCAGAATGCATTTCGAGCAAAAAACCGATGACTACACCGCCCGGGTTCTGTATGAAGCTGTGGCACTGA 2253 44.07 MNWYSYGSCSICWSLVWILIYYILGAIFDSPKCSKLTMQEKRELVYEISKSHGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKKLSVPEVLKNLEPQSPVAGHKTTKRQRKSEHLAQLSVPASDFPTSSSHNDSGHTACCKNLACRATLNPEDAFCRRCSCCICRQYDDNKDPSLWISCSEEPPFQGDSCNMSCHLECALKDERSGISKAGRSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDESVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIDLLDSMLSSKSLHLSPNPDIQDANFLPANMVRFEDVQTTSLTLVLSCENGSSENQVGFTIWHRKADDADYLAEPTCILRQPKARCVVMGLSPATKYHFKIVQFEGTRELREFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNIGKNSTAYSKGTEMLSSAILSTDAFNLSDNGEEGTPAGTVSVLDEANAAGMVGLIPSSVASKLENRHGPTAPKLNTDNQLNALVRSGMERQPFVGCSEDGLPITPCKLEVLKDSHGRGERPKSGCKDLDNRTRKGGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIDDPASLAEQLVDTFSECISSKKPMTTPPGFCMKLWH 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8597210 8601664 + Lsi11G007620.1 Lsi11g00762 673929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00762 750 Pfam PHD - plant homeodomain finger protein 156 275 IPR032881 -
Lsi11g00762 750 PANTHER VIN3-LIKE PROTEIN 2-RELATED 25 750 IPR044514 GO:0010048|GO:0040029
Lsi11g00762 750 MobiDBLite consensus disorder prediction 112 145 - -
Lsi11g00762 750 PANTHER VIN3-LIKE PROTEIN 2-RELATED 25 750 - -
Lsi11g00762 750 CDD FN3 365 435 IPR003961 GO:0005515
Lsi11g00762 750 MobiDBLite consensus disorder prediction 612 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00762 - - - csv:101222501 1345.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi06g01184 Lsi11g00762 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01018 Lsi-Chr8:18751282 Lsi11g00762 Lsi-Chr11:8597210 2.86E-17 dispersed
Lsi11g00275 Lsi-Chr11:2814108 Lsi11g00762 Lsi-Chr11:8597210 7.84E-23 dispersed
Lsi11g00762 Lsi-Chr11:8597210 Lsi02g02559 Lsi-Chr2:32066689 8.01E-10 dispersed
Lsi11g00762 Lsi-Chr11:8597210 Lsi06g01184 Lsi-Chr6:22123899 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g996 Blo01g00674 . Bda01g01916 . . Bpe02g02083 . . Cmo10g00421 Cmo11g00383 . . Car05g00633 . . Cpe04g01308 Cpe18g00625 Bhi02g00750 Tan09g1695 . . Hepe09g0475 . . Cla11g01180 Cam11g1238 Cec11g1250 Cco11g1245 Clacu11g1397 Cmu11g1222 Cre11g1642 Cone2ag0714 Cone16ag0292 . . Lsi06g01184 Csa02g00638 Chy05g00899 Cme02g01578 . . . . . Bpe13g01070 Bma01g00377 Bma06g01054 . . . Cma10g00392 Cma11g00387 Car10g00371 Car11g00358 Cpe11g00638 . Bhi06g01254 . . . Hepe08g2123 . . Cla06g01336 Cam06g1487 Cec06g1544 Cco06g1539 Clacu06g1445 Cmu06g1407 Cre06g2216 Lsi11g00762 Csa01g02159 Chy02g02233 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00762 CCT 25 487 PHD Gene Family AT4G30200 52.9 3.0e-128 456.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00762 Lsi_Chr11 FPKM 7.491965 8.374098 11.00905 12.27718 5.696157 5.559714 5.870522 12.067092 11.294992 11.834075