Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00770 ATGGGAAACGACACCGCTTTAACTCTCGAAGAGATCAAGAACGAGACTGTTGATCTGGAGAAAATCCCTATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTAAGTTCTCAAGAAGGGGAGAACCGTCTTCAAATCTTTGGTCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTTCTTGGGTTTATGTGGAATCCTCTATCTTGGGTCATGGAAGCTGCAGCTATCATGGCCATTGCCTTGGCCAACGGTGGCGGTCGGGGACCGGATTGGCAGGACTTCGTCGGTATCGTCTGTCTGTTGGTTATCAACTCTACCATCAGTTTCATTGAAGAAAACAATGCTGGTAATGCAGCAGCTGCTCTTATGGCTGGTCTTGCACCTAAAACTAAGATCTTGACTCTTTGCAACTGCAAAGAGGACTTCAAGAGGAAGGTGTTTTCTGTAATTGACAAGTTTGCCGAGCGTGGACTTCGATCGTTGGCTGTTGCTAGACAGGAAGTGCCTGAGAAGACTAAGGAGAGTCCCGGTGCTCCATGGCAATTCGTCGGTTTGTTGCCCCTTTTCGATCCTCCTAGACACGACAGTGCAGAAACCATTCGCAGGGCTCTCAACTTGGGTGTGAATGTCAAGATGATTACTGGTGATCAACTTGCTATTGCAAAGGAAACTGGTCGAAGACTTGGAATGGGAACAAATATGTATCCATCTTCTTCCTTACTCGGCCAACACAAGGACGAAAGCATTGCTGGCCTTCCAGTTGAAGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTGTTTCCAGAACACAAGTACGAAATCGTAAAGAAGTTGCAAGAGAGAAAGCACATTTGTGGAATGACAGGAGATGGTGTGAACGATGCTCCTGCTTTAAAGAAGGCCGACATTGGTATTGCTGTTGCTGATGCTACTGATGCTGCACGTGGTGCATCCGACATCGTCCTTACCGAGCCTGGTTTGAGTGTTATCATCAGCGCCGTGTTGACCAGCAGAGCAATCTTCCAGAGGATGAAGAACTATACCATTTATGCAGTTTCCATCACTATTCGTATTGTGTTTGGTTTCATGTTGATTGCTCTCATTTGGAAATTTGATTTCTCTCCCTTCATGGTTTTGATTATTGCTATCCTGAATGATGGTACAATTATGACAATTTCAAAGGACAGAGTCAAGCCATCTCCATTACCTGACAGTTGGAAGCTAAAGGAGATTTTCGCAACCGGAGTAGTACTCGGAGGGTACTTGGCATTGATGACGGTTATATTCTTTTGGTTAATGGACGGAACGAACTTCTTTTCGGATACATTCCATGTAAGATCGATCCGTGGTAATGAAGATGAAAAGATGGCTGCATTGTACCTGCAAGTGAGTATTGTCAGCCAGGCTTTGATATTTGTAACTAGATCGCGCGGCTGGTCGTATATCGAGCGACCTGGACTTCTATTAGTGGGCGCTTTCTTGATTGCACAACTGGTTGCCACTTTGATCGCGGTATATGCAAACTGGGGATTCGCAAAGATCAAGGGAATCGGATGGGGATGGGCCGGTGTCATCTGGCTTTACAGCATCGTTTTCTATATTCCACTCGATATCATGAAGTTCGCTATTCGATACATATTGAGCGGAAAGGCGTGGCTCAACTTGTTAGAAAACAAGACTGCTTTCACCACCAAGAAAGACTATGGAAAAGAGGAAAGAGAAGCTCAATGGGCCCTTGCTCAAAGGACATTACATGGACTTCAACCACCCGAGTCGACGAACATCTTCTCCGAAAAGAGCAGCTACAGAGAACTCTCCGAAATCGCAGAGCAAGCTAAGAGACGTGCCGAGATTGCAAGGTAA 1887 45.36 MGNDTALTLEEIKNETVDLEKIPIEEVFEQLKCTREGLSSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGRGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKILTLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESPGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTNFFSDTFHVRSIRGNEDEKMAALYLQVSIVSQALIFVTRSRGWSYIERPGLLLVGAFLIAQLVATLIAVYANWGFAKIKGIGWGWAGVIWLYSIVFYIPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIAR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8790027 8796819 + Lsi11G007700.1 Lsi11g00770 673937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00770 628 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 271 384 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00770 628 Gene3D - 142 196 IPR023299 GO:0000166
Lsi11g00770 628 PANTHER PLASMA MEMBRANE ATPASE 138 628 - -
Lsi11g00770 628 Gene3D - 69 141 - -
Lsi11g00770 628 Gene3D - 334 523 - -
Lsi11g00770 628 PANTHER CALCIUM-TRANSPORTING ATPASE 138 628 - -
Lsi11g00770 628 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Lsi11g00770 628 Pfam haloacid dehalogenase-like hydrolase 190 310 - -
Lsi11g00770 628 Gene3D - 197 333 IPR023214 -
Lsi11g00770 628 PANTHER PLASMA MEMBRANE ATPASE 1 140 - -
Lsi11g00770 628 Gene3D - 608 628 - -
Lsi11g00770 628 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Lsi11g00770 628 Coils Coil 610 628 - -
Lsi11g00770 628 SUPERFAMILY HAD-like 188 342 IPR036412 -
Lsi11g00770 628 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 555 IPR023298 -
Lsi11g00770 628 PRINTS P-type cation-transporting ATPase superfamily signature 296 315 - -
Lsi11g00770 628 PRINTS P-type cation-transporting ATPase superfamily signature 213 223 - -
Lsi11g00770 628 PRINTS P-type cation-transporting ATPase superfamily signature 319 331 - -
Lsi11g00770 628 PRINTS P-type cation-transporting ATPase superfamily signature 191 202 - -
Lsi11g00770 628 PANTHER CALCIUM-TRANSPORTING ATPASE 1 140 - -
Lsi11g00770 628 PRINTS H+-transporting ATPase (proton pump) signature 153 171 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00770 628 PRINTS H+-transporting ATPase (proton pump) signature 327 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00770 628 PRINTS H+-transporting ATPase (proton pump) signature 268 284 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00770 628 PRINTS H+-transporting ATPase (proton pump) signature 296 312 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00770 628 PRINTS H+-transporting ATPase (proton pump) signature 468 489 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00770 628 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 139 202 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02191 Lsi-Chr4:28965266 Lsi11g00770 Lsi-Chr11:8790027 0 dispersed
Lsi11g00377 Lsi-Chr11:3879425 Lsi11g00770 Lsi-Chr11:8790027 0 dispersed
Lsi11g00770 Lsi-Chr11:8790027 Lsi06g01189 Lsi-Chr6:22187758 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00770 K01535 - csv:101221564 929.858