Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00779 ATGATGGGTGAGGAAGCAATGGAGAAGATGAATAAGAAATTAATGAGAGAAAACAAATTGCAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAATTCCTTTGATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTCATTGTCCCTACAAGAACACTTATTGTTGTTCATGATTCCCTCCTCATTTCCCAACTTCAAATTGTCAAAGCTCTAAATGAAGCAAGATTAGAGGCAAATGTACAATTAAATGGAAAGGGAATTAACAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGGTTGCTTTTAACGGCGTCGTTTTTGAAGTATGTGTACCACCCATTGCGGTGGCTCGCCATCGCCGCCGTTGCCGCCGGCATCTTTCCCATTCTTCTAAAAGCCATTTCCTCCATTCGCCACCTCAGAATTGATGTCAACATTCTTGCTATTATTGCTGTTGTGGGGACAATTGCAATGGATGATTACATGGAAGCTGGAAGTATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGCTGCAATGTCTTCGTTAATGAGGCTAGCTCCTCAAAAAGCCACTATAGCGGAAAGTGGAGAGGTTGTAGATGCAAAAGAGGTGAAATTGAAGAGTGTATTGGCTGTGAAGGCTGGAGAAGTTATTCCCATTGATGGTATTGTAGTGGAAGGAAAATCTGAGGTTGATGAGAAAATTTTGACCGGAGAAACTTTCCCAGTTCCCAAACACATACATTCTCTTGTTTGGGCTGGTACCATCAATTTAAATGGTTATATCAGTGTTGAAACAACAGTTGTTGCTGAGGAGTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCAAAATAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACCCCAGCTGTTGTTATGATATCAGCTTGTCTAGCAGCCATTCCAGCTGCATTGAGAGTTCATAATCTCAGCCATTGGCTTCACTTAGCTTTGGTGGTTTTAGTGAGTGCATGTCCTTGTGCCCTAATCCTCTCCACCCCGGTCGCCGCCTTTTGTGCCCTTACGAGGGCCGCCATGACCGGAGTTTTGATCAAAGGCGGCGACCACCTTGAAGTTCTTGCAAAGATTAAGGTTATGGCCTTTGACAAAACTGGCACAATCACTAGAGGTGAATTTGTTGTAACACATTTTCAAGCTCTAAGAGATGATATTAGCTTCCACACCTTGCTCCAATGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTCAACCATGGAAAGTTGCTTTCTATTGATGTTAAACCCGAAAGCGTTGAGGAATTTGAAAATTTTCCAGGAGAAGGTGTTCGTGGGAAGATAGATGGGAATGATATTTACATTGGAAGTAGAAAAATTGCTGCCAGAGCTGGCTACGACACATCAGATTTGAACTTTGACGATGAAACGAAACAAGAGCAAACCCTTGGATATGTGTTTTGTGGTGGGACGTTAATCGGATCCTTCGGTCTTTCGGACTCTTGTCGCTCGGGAGTTAAAGAGGCAATCGAGGAGATTAAGAGTTTTGGTATTAAAACAGCTATGCTTACTGGAGATTGCAGTGCAGCTGCCATGCATGCCCAAGAACAGGTCGTATATTTCTTTTATGCTTCTCGCATACCTTCTAAGTTTTTGAGTTTAACGCTCAGGAATGCGCTCGACGTAATCCATTCAGAACTTCTACCAAAGGAAAAGGCAAATATCATAAAAGAATTTAAAAATGATGGAGCAATTGCCATGGTTGGAGATGGTTTAAACGATACCCCAGCATTAGCCACAGCTGATATTGGCATATCAATGGGTGTTTCAGGTTCAGCATTGGCCACTGAAACTGGGAATGTGATCTTAATGTCAAATGACATGAGAAAAATTCCAAAAGTCATCAAACTAGCAAAGAAATTCCATACAAAAGTAGTTCAAAATGTCATTTTGTCAATCGGTACAAAGACCGCGATCCTCGGCCTAGCATTCGCCGGACATCCGCTCGTTTGGGCAGCCGTTCTTGCCGACGTCGGTACGTGCCTATTGGTCATCTTGAATAGCATGCTTCTTTTGAGAGGAATTGATCACAAACATGGGAAGAAATGTTGCAAATCTTCCAACCCATGCTTGGCGAAACATGGACAACGATACGATTGTGATAACACTCGATCATCTCATCATCACGAGCATCATCATCAACATCACCATAATCATCGATGCCATGTCGTCGATGATCAATCACCTAGTCGAGAGAACAATCATGTCCATAAGCATTGTTGTTCCGAGAAAAAGGATTGTAAGATTCAGCTTCCTAATCAGGATCGCGATAGAGAAAATTATAGAGTGAACCAAGAGAAGAATGATGAATATGGTGATGATGAGTGTGAGGAAACTAATTTGCGTCATAAAAAAGAAGATAAGTTTCATCACAACCACCATTCAAATCAATGTGAGAAAACCCCACCTGAGGAAGGGAGTAACGGAAATTCTTCAAAGAAAGTGGCTGAATCAAATTGTTGTAATTTCCACTCACATCATGTTGCTATTGAGATTGATGAAGGAAATGAGTGTGAGAGAGTTATAGAGCATAAATAA 2700 41.59 MMGEEAMEKMNKKLMRENKLQRSHFDVLGICCSSEIPLIENILKPLEGIKQISVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANVQLNGKGINKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAIAAVAAGIFPILLKAISSIRHLRIDVNILAIIAVVGTIAMDDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMRLAPQKATIAESGEVVDAKEVKLKSVLAVKAGEVIPIDGIVVEGKSEVDEKILTGETFPVPKHIHSLVWAGTINLNGYISVETTVVAEECVVAKMAELVEEAQNNKSKTQRFIDECAKYYTPAVVMISACLAAIPAALRVHNLSHWLHLALVVLVSACPCALILSTPVAAFCALTRAAMTGVLIKGGDHLEVLAKIKVMAFDKTGTITRGEFVVTHFQALRDDISFHTLLQWVSSIESKSSHPMAAALVNHGKLLSIDVKPESVEEFENFPGEGVRGKIDGNDIYIGSRKIAARAGYDTSDLNFDDETKQEQTLGYVFCGGTLIGSFGLSDSCRSGVKEAIEEIKSFGIKTAMLTGDCSAAAMHAQEQVVYFFYASRIPSKFLSLTLRNALDVIHSELLPKEKANIIKEFKNDGAIAMVGDGLNDTPALATADIGISMGVSGSALATETGNVILMSNDMRKIPKVIKLAKKFHTKVVQNVILSIGTKTAILGLAFAGHPLVWAAVLADVGTCLLVILNSMLLLRGIDHKHGKKCCKSSNPCLAKHGQRYDCDNTRSSHHHEHHHQHHHNHRCHVVDDQSPSRENNHVHKHCCSEKKDCKIQLPNQDRDRENYRVNQEKNDEYGDDECEETNLRHKKEDKFHHNHHSNQCEKTPPEEGSNGNSSKKVAESNCCNFHSHHVAIEIDEGNECERVIEHK 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8958115 8970025 + Lsi11G007790.1 Lsi11g00779 673946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00779 899 SUPERFAMILY HMA, heavy metal-associated domain 17 87 IPR036163 GO:0046872
Lsi11g00779 899 Gene3D - 17 90 - -
Lsi11g00779 899 Gene3D - 191 306 - -
Lsi11g00779 899 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 15 755 - -
Lsi11g00779 899 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 597 699 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00779 899 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 177 571 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00779 899 SFLD p-type atpase 385 674 IPR044492 -
Lsi11g00779 899 MobiDBLite consensus disorder prediction 806 869 - -
Lsi11g00779 899 Gene3D - 395 673 IPR023214 -
Lsi11g00779 899 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872
Lsi11g00779 899 Pfam E1-E2 ATPase 206 381 - -
Lsi11g00779 899 MobiDBLite consensus disorder prediction 830 854 - -
Lsi11g00779 899 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Lsi11g00779 899 SUPERFAMILY Calcium ATPase, transduction domain A 217 302 IPR008250 -
Lsi11g00779 899 MobiDBLite consensus disorder prediction 806 823 - -
Lsi11g00779 899 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 154 512 - -
Lsi11g00779 899 MobiDBLite consensus disorder prediction 774 791 - -
Lsi11g00779 899 SFLD C1.7: P-type atpase like 385 674 - -
Lsi11g00779 899 MobiDBLite consensus disorder prediction 855 869 - -
Lsi11g00779 899 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 397 IPR023298 -
Lsi11g00779 899 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 15 755 - -
Lsi11g00779 899 Gene3D - 414 536 IPR023299 GO:0000166
Lsi11g00779 899 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 154 725 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lsi11g00779 899 PRINTS P-type cation-transporting ATPase superfamily signature 622 641 - -
Lsi11g00779 899 PRINTS P-type cation-transporting ATPase superfamily signature 646 658 - -
Lsi11g00779 899 PRINTS P-type cation-transporting ATPase superfamily signature 550 560 - -
Lsi11g00779 899 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Lsi11g00779 899 PRINTS P-type cation-transporting ATPase superfamily signature 403 417 - -
Lsi11g00779 899 MobiDBLite consensus disorder prediction 756 791 - -
Lsi11g00779 899 CDD P-type_ATPase_HM 104 724 - -
Lsi11g00779 899 SUPERFAMILY HAD-like 402 723 IPR036412 -
Lsi11g00779 899 Pfam haloacid dehalogenase-like hydrolase 399 636 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00233 Lsi-Chr10:3799223 Lsi11g00779 Lsi-Chr11:8958115 1.46E-58 dispersed
Lsi10g00527 Lsi-Chr10:7523348 Lsi11g00779 Lsi-Chr11:8958115 3.63E-46 dispersed
Lsi11g00779 Lsi-Chr11:8958115 Lsi02g02253 Lsi-Chr2:29003705 2.22E-17 dispersed
Lsi01g00038 Lsi-Chr1:431400 Lsi11g00779 Lsi-Chr11:8958115 9.64E-19 transposed
Lsi11g00779 Lsi-Chr11:8958115 Lsi06g01195 Lsi-Chr6:22295824 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00779 K01534 - csv:101203668 1421.76